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Calibration of evolutionary models with branching trajectories

Develop calibration methodologies for evolutionary models that exhibit multiple possible trajectories such that predictions and tests remain meaningful; specifically, devise principled methods to determine whether unobserved outcomes were possible but not realized or were precluded by structural features of the model, thereby resolving ambiguity in model validation.

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Background

The authors highlight a key methodological challenge for predictive modeling of evolutionary systems: when models produce many possible outcomes but data are sparse, straightforward calibration can either suppress genuine possibilities or fail to detect structural mis-specifications.

They emphasize that without a way to decide whether unobserved outcomes were possible, predictions become ambiguous and standard scientific validation practices are undermined.

References

How do we calibrate an evolutionary model with multiple possible trajectories when we may have many fewer data sets than the model has possible outcomes? If we calibrate so that the model produces only observed outcomes, then if the model is structurally correct we will have seriously mis-calibrated it, so that the model cannot predict outcomes that could have happened but did not; on the other hand, perhaps the model is structurally incorrect, and those unobserved outcomes could not in fact have happened. We have no way of knowing which of these possibilities is the case.

Open Questions about Time and Self-reference in Living Systems (2508.11423 - Abramsky et al., 15 Aug 2025) in Section 7 (Conclusions)