Community-Based Early-Stage Chronic Kidney Disease Screening using Explainable Machine Learning for Low-Resource Settings

Abstract: Early detection of chronic kidney disease (CKD) is essential for preventing progression to end-stage renal disease. However, existing screening tools - primarily developed using populations from high-income countries - often underperform in Bangladesh and South Asia, where risk profiles differ. Most of these tools rely on simple additive scoring functions and are based on data from patients with advanced-stage CKD. Consequently, they fail to capture complex interactions among risk factors and are limited in predicting early-stage CKD. Our objective was to develop and evaluate an explainable ML framework for community-based early-stage CKD screening for low-resource settings, tailored to the Bangladeshi and South Asian population context. We used a community-based dataset from Bangladesh, the first such CKD dataset in South and South Asia, and evaluated twelve ML classifiers across multiple feature domains. Ten complementary feature selection techniques were applied to identify robust, generalizable predictors. The final models were assessed using 10-fold cross-validation. External validation was conducted on three independent datasets from India, the UAE, and Bangladesh. SHAP (SHapley Additive exPlanations) was used to provide model explainability. An ML model trained on an RFECV-selected feature subset achieved a balanced accuracy of 90.40%, whereas minimal non-pathology-test features demonstrated excellent predictive capability with a balanced accuracy of 89.23%, often outperforming larger or full feature sets. Compared with existing screening tools, the proposed models achieved substantially higher accuracy and sensitivity while requiring fewer and more accessible inputs. External validation confirmed strong generalizability with 78% to 98% sensitivity. SHAP interpretation identified clinically meaningful predictors consistent with established CKD risk factors.