Equivalence of histology-based ROR-P predictions to transcriptomic assay in homogeneous treatment settings
Ascertain whether attention-based multiple instance learning models using pathology foundation model features to predict PAM50-based ROR-P from H&E-stained whole slide images can match the clinical performance of the transcriptomic PAM50-based ROR-P assay in guiding treatment decisions and in predicting outcomes in cohorts with uniform treatment protocols, thereby verifying equivalence in homogeneously treated populations.
References
Therefore, while the predictions of our models align well with transcriptomic ROR-P (as measured by ROC AUC, Pearson r, and C-index), we cannot conclude that they would match the assay's performance in guiding treatment decisions or predicting outcomes in homogeneously treated populations.
                — Towards interpretable prediction of recurrence risk in breast cancer using pathology foundation models
                
                (2508.12025 - Kaczmarzyk et al., 16 Aug 2025) in Discussion — Limitations