The BIDS Toolbox: A web service to manage brain imaging datasets (1906.09996v1)

Abstract: Data sharing is a key factor for ensuring reproducibility and transparency of scientific experiments, and neuroimaging is no exception. The vast heterogeneity of data formats and imaging modalities utilised in the field makes it a very challenging problem. In this context, the Brain Imaging Data Structure (BIDS) appears as a solution for organising and describing neuroimaging datasets. Since its publication in 2015, BIDS has gained widespread attention in the field, as it provides a common way to arrange and share multimodal brain images. Although the evident benefits it presents, BIDS has not been widely adopted in the field of MRI yet and we believe that this is due to the lack of a go-to tool to create and managed BIDS datasets. Motivated by this, we present the BIDS Toolbox, a web service to manage brain imaging datasets in BIDS format. Different from other tools, the BIDS Toolbox allows the creation and modification of BIDS-compliant datasets based on MRI data. It provides both a web interface and REST endpoints for its use. In this paper we describe its design and early prototype, and provide a link to the public source code repository.