Fluid mechanics of sarcomeres as porous media (2503.14202v1)

Abstract: Muscle contraction, both in skeletal and cardiac tissue, is driven by sarcomeres, the microscopic units inside muscle cells where thick myosin and thin actin filaments slide past each other. During contraction and relaxation, the sarcomere's volume changes, causing sarcoplasm (intra-sarcomeric fluid) to flow out during contraction and back in as the sarcomere relaxes. We present a quantitative model of this sarcoplasmic flow, treating the sarcomere as an anisotropic porous medium with regions defined by the presence and absence of thick and thin filaments. Using semi-analytic methods, we solve for axial and lateral fluid flow within the filament lattice, calculating the permeabilities of this porous structure. We then apply these permeabilities within a Darcy model to determine the flow field generated during contraction. The predictions of our continuum model show excellent agreement with finite element simulations, reducing computational time by several orders of magnitude while maintaining accuracy in modelling the biophysical flow dynamics.