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Does the ME/CFS gut microbiome stabilize toward a control-like state over time?

Establish whether the gut microbiome in ME/CFS patients stabilizes over time and reverts toward a composition resembling healthy controls, including reacquisition of low-abundance species and normalization of alpha diversity metrics.

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Background

Cross-sectional comparisons in the paper suggest that short-term ME/CFS patients exhibit marked dysbiosis (loss of diversity and high heterogeneity), whereas long-term patients appear more similar to controls in overall composition, despite notable differences in low-abundance taxa.

The authors conjecture a temporal trajectory in which the microbiome converges toward a more control-like ecosystem, a hypothesis that would benefit from longitudinal validation.

References

Over time, we conjecture that the microbiota then stabilizes and reverts to an ecosystem more characteristic of healthy controls, with the reacquisition of some low abundance species and normalization of diversity.

Advancing Digital Precision Medicine for Chronic Fatigue Syndrome through Longitudinal Large-Scale Multi-Modal Biological Omics Modeling with Machine Learning and Artificial Intelligence (2506.15761 - Xiong, 18 Jun 2025) in Chapter 1, subsection 'Microbial dysbiosis occurs in short-term ME/CFS and stabilizes in long-term disease'