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Applicability of segmentation-based stain accuracy metrics to unpaired datasets

Ascertain whether segmentation-based stain accuracy metrics that rely on pixel-level paired annotations between hematoxylin and eosin and immunohistochemistry images are applicable to unpaired datasets used for evaluating virtual immunohistochemistry.

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Background

The proposed accuracy framework computes overlap between brown DAB masks from real and virtual IHC and thus requires pixel-aligned H&E–IHC pairs, which are resource-intensive to obtain.

Because many virtual staining models are trained and evaluated on unpaired data, the authors highlight uncertainty about using these segmentation-based metrics in that setting and note that direct stain-accuracy evaluation is infeasible without ground truth.

References

First, segmentation-based metrics depend on pixel-level paired annotations, and their applicability to unpaired datasets remains uncertain.

Building Trust in Virtual Immunohistochemistry: Automated Assessment of Image Quality (2511.04615 - Kataria et al., 6 Nov 2025) in Limitations subsection of Discussion