CodeSentinel: A Three-Layer Defense Against Indirect Prompt Injection in Code Contexts

Abstract: Code LLMs increasingly retrieve external code context from repositories, documentation, issue threads, and coding-agent environments, creating an indirect prompt-injection surface where attackers hide instructions in comments, strings, identifiers, or decoy code. We propose CodeSentinel, a three-layer inference-time sanitizer. It uses Tree-sitter to extract high-risk model-facing CST nodes, then combines syntax-guided pre-filtering, CST-guided Dynamic Min-K\% scoring, and node perturbation analysis to detect adversarial and natural-looking semantic triggers. Detected nodes are removed or neutralized before reaching the downstream Code LLM. Across six recent attack families, \CodeSentinel achieves 0.80 average node-level F1, outperforming CodeGarrison, DePA, and KillBadCode.