Toward a Scientific Discovery Engine for Weather and Climate Data: A Visual Analytics Workbench for Embedding-Based Exploration

Abstract: Earth system science is producing increasingly large, high-dimensional datasets from physics based Earth system models to AI-based weather and climate models. Embedding-based representations can make these data searchable through similarity search and analog retrieval, but nearest neighbors in latent space are not automatically scientifically meaningful: it may reflect real weather structure, or preprocessing, geography, or model bias. Researchers therefore need ways to inspect how embeddings organize meteorological data, compare representation models, develop retrieval strategies, and verify results against physical evidence. We present an open-source visual analytics workbench for each of these steps. The system links embedding experiments to source data, metadata, spatial context, and model configurations, so latent-space results can be traced back to the physics. Users can explore latent spaces for different models, issue global or localized queries, and inspect analogs through familiar meteorological views. This enables a discovery workflow in which scientists characterize a phenomenon of interest in a well-understood dataset, identifying its signature in latent space, and then use that signature to probe larger, less-labeled archives or ensembles for similar events. We demonstrate the workbench through tropical-cyclone retrieval using ERA5-derived embeddings and IBTrACS metadata, and evaluate its out-of-core retrieval backend to show that large embedding collections can be searched beyond in-memory limits on commodity workstation hardware.