Label-efficient underwater species classification with semi-supervised learning on frozen foundation model embeddings

Abstract: Automated species classification from underwater imagery is bottlenecked by the cost of expert annotation, and supervised models trained on one dataset rarely transfer to new conditions. We investigate whether semi-supervised methods operating on frozen foundation model embeddings can close this annotation gap with minimal labeling effort. Using DINOv3 ViT-B embeddings with no fine-tuning, we propagate a small set of labeled seeds through unlabeled data via nearest-neighbor-based self-training and evaluate on the AQUA20 benchmark (20 marine species). With fewer than 5% of the training labels, self-training on frozen embeddings closes much of the gap to a fully supervised ConvNeXt baseline trained on the entire labeled dataset; at full supervision, the gap narrows to a few percentage points, with several species exceeding the supervised baseline. Class separability in the embedding space, measured by ROC-AUC, is high even at extreme label scarcity, indicating that the frozen representations capture discriminative structure well before decision boundaries can be reliably estimated. Our approach requires no training, no domain-specific data engineering, and no underwater-adapted models, establishing a practical, immediately deployable baseline for label-efficient marine species recognition. All results are reported on the held-out test set over 100 random seed initializations.