Detecting Spike Wave Discharges (SWD) using 1-dimensional Residual UNet

Abstract: The manual labeling of events in electroencephalography (EEG) records is time-consuming. This is especially true when EEG recordings are taken continuously over weeks to months. Therefore, a method to automatically label pertinent EEG events reduces the manual workload. Spike wave discharges (SWD), which are the electrographic hallmark of absence seizures, are EEG events that are often labeled manually. While some previous studies have utilized machine learning to automatically segment and classify EEG signals like SWDs, they can be improved. Here we compare the performance of 14 machine learning classifiers on our own manually annotated dataset of 961 hours of EEG recordings from C3H/HeJ mice, including 22,637 labeled SWDs. We find that a 1D UNet performs best for labeling SWDs in this dataset. We also improve the 1D UNet by augmenting our training data and determine that scaling showed the greatest benefit of all augmentation procedures applied. We then compare the 1D UNet with data augmentation, AugUNet1D, against a recently published time- and frequency-based algorithmic approach called "Twin Peaks". AugUNet1D showed superior performance and detected events with more similar features to the SWDs labeled manually. AugUNet1D, pretrained on our manually annotated data or untrained, is made public for others users.