Unlocking n-alk-1-ynes Conformers: Quantum "Trigger Finger" versus "Stiff Joint" Conformations (2511.02470v1)

Abstract: Molecular conformation in n-alk-1-ynes (CnA) is conventionally simplified to an all-planar structure. We report a comprehensive quantum chemical analysis revealing two near-isoenergetic rotamers at the acetylenic terminus: planar (C$_s$) and skewed (C$_1$). The high, symmetric rotational energy barrier ($\approx 150$\,meV) arises from unique steric relief near the $\mathrm{sp}$ center coupled with electronic stabilization of C$_1$. This creates a unique kinetic profile: a Quantum Trigger Finger'' ($\alpha$ rotation) that enforces an $\approx 50\%:\,50\%$ $\mathrm{C}_s/\mathrm{C}_1$ ensemble, sharply contrasting with the thermodynamically biasedStiff Joint'' ($\delta$ rotation) of the alkyl chain. This structural degeneracy necessitates ensemble averaging for spectroscopic data interpretation, while the slow interconversion permits kinetic trapping and intentional conformer enrichment during synthesis and molecular junction fabrication. Our work redefines the alkyne anchor, providing a blueprint for accurate interpretation of spectroscopic data and achieving conformational control in molecular electronics.