flowengineR: A Modular and Extensible Framework for Fair and Reproducible Workflow Design in R

Abstract: flowengineR is an R package designed to provide a modular and extensible framework for building reproducible algorithmic workflows for general-purpose machine learning pipelines. It is motivated by the rapidly evolving field of algorithmic fairness where new metrics, mitigation strategies, and machine learning methods continuously emerge. A central challenge in fairness, but also far beyond, is that existing toolkits either focus narrowly on single interventions or treat reproducibility and extensibility as secondary considerations rather than core design principles. flowengineR addresses this by introducing a unified architecture of standardized engines for data splitting, execution, preprocessing, training, inprocessing, postprocessing, evaluation, and reporting. Each engine encapsulates one methodological task yet communicates via a lightweight interface, ensuring workflows remain transparent, auditable, and easily extensible. Although implemented in R, flowengineR builds on ideas from workflow languages (CWL, YAWL), graph-oriented visual programming languages (KNIME), and R frameworks (BatchJobs, batchtools). Its emphasis, however, is less on orchestrating engines for resilient parallel execution but rather on the straightforward setup and management of distinct engines as data structures. This orthogonalization enables distributed responsibilities, independent development, and streamlined integration. In fairness context, by structuring fairness methods as interchangeable engines, flowengineR lets researchers integrate, compare, and evaluate interventions across the modeling pipeline. At the same time, the architecture generalizes to explainability, robustness, and compliance metrics without core modifications. While motivated by fairness, it ultimately provides a general infrastructure for any workflow context where reproducibility, transparency, and extensibility are essential.