Why Prototypes Collapse: Diagnosing and Preventing Partial Collapse in Prototypical Self-Supervised Learning

Abstract: Prototypical self-supervised learning methods consistently suffer from partial prototype collapse, where multiple prototypes converge to nearly identical representations. This undermines their central purpose -- providing diverse and informative targets to guide encoders toward rich representations -- and has led practitioners to over-parameterize prototype sets or add ad-hoc regularizers, which mitigate symptoms rather than address the root cause. We empirically trace the collapse to the joint optimization of encoders and prototypes, which encourages a type of shortcut learning: early in training prototypes drift toward redundant representations that minimize loss without necessarily enhancing representation diversity. To break the joint optimization, we introduce a fully decoupled training strategy that learns prototypes and encoders under separate objectives. Concretely, we model prototypes as a Gaussian mixture updated with an online EM-style procedure, independent of the encoder's loss. This simple yet principled decoupling eliminates prototype collapse without explicit regularization and yields consistently diverse prototypes and stronger downstream performance.