Leveraging GNN to Enhance MEF Method in Predicting ENSO

Abstract: Reliable long-lead forecasting of the El Nino Southern Oscillation (ENSO) remains a long-standing challenge in climate science. The previously developed Multimodal ENSO Forecast (MEF) model uses 80 ensemble predictions by two independent deep learning modules: a 3D Convolutional Neural Network (3D-CNN) and a time-series module. In their approach, outputs of the two modules are combined using a weighting strategy wherein one is prioritized over the other as a function of global performance. Separate weighting or testing of individual ensemble members did not occur, however, which may have limited the model to optimize the use of high-performing but spread-out forecasts. In this study, we propose a better framework that employs graph-based analysis to directly model similarity between all 80 members of the ensemble. By constructing an undirected graph whose vertices are ensemble outputs and whose weights on edges measure similarity (via RMSE and correlation), we identify and cluster structurally similar and accurate predictions. From which we obtain an optimized subset of 20 members using community detection methods. The final prediction is then obtained by averaging this optimized subset. This method improves the forecast skill through noise removal and emphasis on ensemble coherence. Interestingly, our graph-based selection shows robust statistical characteristics among top performers, offering new ensemble behavior insights. In addition, we observe that while the GNN-based approach does not always outperform the baseline MEF under every scenario, it produces more stable and consistent outputs, particularly in compound long-lead situations. The approach is model-agnostic too, suggesting that it can be applied directly to other forecasting models with gargantuan ensemble outputs, such as statistical, physical, or hybrid models.