MIBoost: A Gradient Boosting Algorithm for Variable Selection After Multiple Imputation

Abstract: Statistical learning methods for automated variable selection, such as LASSO, elastic nets, or gradient boosting, have become increasingly popular tools for building powerful prediction models. Yet, in practice, analyses are often complicated by missing data. The most widely used approach to address missingness is multiple imputation, which creates several completed datasets. However, there is an ongoing debate on how to perform model selection in the presence of multiple imputed datasets. Simple strategies, such as pooling models across datasets, have been shown to have suboptimal properties. Although more sophisticated methods exist, they are often difficult to implement and therefore not widely applied. In contrast, two recent approaches modify the regularization methods LASSO and elastic nets by defining a single loss function, resulting in a unified set of coefficients across imputations. Our key contribution is to extend this principle to the framework of component-wise gradient boosting by proposing MIBoost, a novel algorithm that employs a uniform variable-selection mechanism across imputed datasets. Simulation studies suggest that our approach yields prediction performance comparable to that of these recently proposed methods.