Smartphone-integrated RPA-CRISPR-Cas12a Detection System with Microneedle Sampling for Point-of-Care Diagnosis of Potato Late Blight in Early Stage

Abstract: Potato late blight, caused by the oomycete pathogen Phytophthora infestans, is one of the most devastating diseases affecting potato crops in the history. Although conventional detection methods of plant diseases such as PCR and LAMP are highly sensitive and specific, they rely on bulky and expensive laboratory equipment and involve complex operations, making them impracticable for point-of care diagnosis in the field. Here in this study, we report a portable RPA-CRISPR based diagnosis system for plant disease, integrating smartphone for acquisition and analysis of fluorescent images. A polyvinyl alcohol (PVA) microneedle patch was employed for sample extraction on the plant leaves within one minute, the DNA extraction efficiency achieved 56 ug/mg, which is approximately 3 times to the traditional CTAB methods (18 ug/mg). The system of RPA-CRISPR-Cas12a isothermal assay was established to specifically target P. infestans with no cross-reactivity observed against closely-related species (P. sojae, P. capsici). The system demonstrated a detection limit of 2 pg/uL for P. infestans genomic DNA, offering sensitivity comparable to that of benchtop laboratory equipment. The system demonstrates the early-stage diagnosis capability by achieving a approximately 80% and 100% detection rate on the third and fourth day post-inoculation respectively, before visible symptoms observed on the leaves. The smartphone-based "sample-to-result" system decouples the limitations of traditional methods that rely heavily on specialized equipment, offering a promising way for early-stage plant disease detection and control in the field.