Geodesic Diffusion Models for Medical Image-to-Image Generation

Abstract: Diffusion models transform an unknown data distribution into a Gaussian prior by progressively adding noise until the data become indistinguishable from pure noise. This stochastic process traces a path in probability space, evolving from the original data distribution (considered as a Gaussian with near-zero variance) to an isotropic Gaussian. The denoiser then learns to reverse this process, generating high-quality samples from random Gaussian noise. However, standard diffusion models, such as the Denoising Diffusion Probabilistic Model (DDPM), do not ensure a geodesic (i.e., shortest) path in probability space. This inefficiency necessitates the use of many intermediate time steps, leading to high computational costs in training and sampling. To address this limitation, we propose the Geodesic Diffusion Model (GDM), which defines a geodesic path under the Fisher-Rao metric with a variance-exploding noise scheduler. This formulation transforms the data distribution into a Gaussian prior with minimal energy, significantly improving the efficiency of diffusion models. We trained GDM by continuously sampling time steps from 0 to 1 and using as few as 15 evenly spaced time steps for model sampling. We evaluated GDM on two medical image-to-image generation tasks: CT image denoising and MRI image super-resolution. Experimental results show that GDM achieved state-of-the-art performance while reducing training time by a 50-fold compared to DDPM and 10-fold compared to Fast-DDPM, with 66 times faster sampling than DDPM and a similar sampling speed to Fast-DDPM. These efficiency gains enable rapid model exploration and real-time clinical applications. Our code is publicly available at: https://github.com/mirthAI/GDM-VE.