A Digital Phantom for 3D MR Spectroscopy Data Simulation (2412.15869v1)

Abstract: Simulated data is increasingly valued by researchers for validating MRS and MRSI processing and analysis algorithms. However, there is no consensus on the optimal approaches for simulation models and parameters. This study introduces a novel 3D MRS digital brain phantom framework, providing a comprehensive and modular foundation for MRS and MRSI data simulation. We generate a digital brain phantom by combining anatomical and tissue label information with metabolite data from the literature. This phantom contains all necessary information for simulating spectral data. We integrate the phantom with a signal-based model to demonstrate its functionality and usability in generating various spectral datasets. Outputs are saved in the NIfTI-MRS format, enabling their use in downstream applications. We successfully implemented and tested the 3D MRS digital brain phantom framework using two different anatomical models at two resolutions. The resulting metabolite maps and spectral datasets demonstrate realistic data quality, flexibility based on user inputs, and reasonable computational efficiency. This innovative 3D digital brain phantom framework provides a clear and structured approach to simulating MRS and MRSI data. Its modular design establishes a strong, adaptable foundation for future advancements in MRS and MRSI simulation, allowing researchers to extend and refine the model to meet the field's evolving needs.