Deep-Learning Recognition of Scanning Transmission Electron Microscopy: Quantifying and Mitigating the Influence of Gaussian Noises

Abstract: Scanning transmission electron microscopy (STEM) is a powerful tool to reveal the morphologies and structures of materials, thereby attracting intensive interests from the scientific and industrial communities. The outstanding spatial (atomic level) and temporal (ms level) resolutions of the STEM techniques generate fruitful amounts of high-definition data, thereby enabling the high-volume and high-speed analysis of materials. On the other hand, processing of the big dataset generated by STEM is time-consuming and beyond the capability of human-based manual work, which urgently calls for computer-based automation. In this work, we present a deep-learning mask region-based neural network (Mask R-CNN) for the recognition of nanoparticles imaged by STEM, as well as generating the associated dimensional analysis. The Mask R-CNN model was tested on simulated STEM-HAADF results with different Gaussian noises, particle shapes and particle sizes, and the results indicated that Gaussian noise has determining influence on the accuracy of recognition. By applying Gaussian and Non-Local Means filters on the noise-containing STEM-HAADF results, the influences of noises are largely mitigated, and recognition accuracy is significantly improved. This filtering-recognition approach was further applied to experimental STEM-HAADF results, which yields satisfying accuracy compared with the traditional threshold methods. The deep-learning-based method developed in this work has great potentials in analysis of the complicated structures and large data generated by STEM-HAADF.