Papers
Topics
Authors
Recent
Search
2000 character limit reached

Exploring the Enigma of Neural Dynamics Through A Scattering-Transform Mixer Landscape for Riemannian Manifold

Published 25 May 2024 in q-bio.NC | (2405.16357v1)

Abstract: The human brain is a complex inter-wired system that emerges spontaneous functional fluctuations. In spite of tremendous success in the experimental neuroscience field, a system-level understanding of how brain anatomy supports various neural activities remains elusive. Capitalizing on the unprecedented amount of neuroimaging data, we present a physics-informed deep model to uncover the coupling mechanism between brain structure and function through the lens of data geometry that is rooted in the widespread wiring topology of connections between distant brain regions. Since deciphering the puzzle of self-organized patterns in functional fluctuations is the gateway to understanding the emergence of cognition and behavior, we devise a geometric deep model to uncover manifold mapping functions that characterize the intrinsic feature representations of evolving functional fluctuations on the Riemannian manifold. In lieu of learning unconstrained mapping functions, we introduce a set of graph-harmonic scattering transforms to impose the brain-wide geometry on top of manifold mapping functions, which allows us to cast the manifold-based deep learning into a reminiscent of MLP-Mixer architecture (in computer vision) for Riemannian manifold. As a proof-of-concept approach, we explore a neural-manifold perspective to understand the relationship between (static) brain structure and (dynamic) function, challenging the prevailing notion in cognitive neuroscience by proposing that neural activities are essentially excited by brain-wide oscillation waves living on the geometry of human connectomes, instead of being confined to focal areas.

Definition Search Book Streamline Icon: https://streamlinehq.com
References (48)
  1. Network neuroscience. Nature Neuroscience, 20(3):353–364, 2017.
  2. Bolt: Fused window transformers for fmri time series analysis. Medical Image Analysis, 88:102841, 2023.
  3. Bhatia, R. Positive definite matrices. Princeton University Press, 2009.
  4. The lifespan human connectome project in aging: an overview. Neuroimage, 185:335–348, 2019.
  5. Large-scale brain networks in cognition: emerging methods and principles. Trends in Cognitive Sciences, 14(6):277–290, 2010.
  6. Complex brain networks: graph theoretical analysis of structural and functional systems. Nature Reviews Neuroscience, 10(3):186–198, 2009.
  7. Learning brain dynamics of evolving manifold functional mri data using geometric-attention neural network. IEEE Transactions on Medical Imaging, 41(10):2752–2763, 2022a.
  8. Uncovering shape signatures of resting-state functional connectivity by geometric deep learning on riemannian manifold. Human Brain Mapping, 43(13):3970–3986, 2022b.
  9. Gabor, D. A new microscopic principle. Nature, 161:777–778, 1948.
  10. Stability of graph scattering transforms. Advances in Neural Information Processing Systems, 32, 2019.
  11. Geometric scattering for graph data analysis. In International Conference on Machine Learning, pp. 2122–2131. PMLR, 2019.
  12. A multi-modal parcellation of human cerebral cortex. Nature, 536(7615):171–178, 2016.
  13. Default-mode network activity distinguishes alzheimer’s disease from healthy aging: evidence from functional mri. Proceedings of the National Academy of Sciences, 101(13):4637–4642, 2004.
  14. Wavelets on graphs via spectral graph theory. Applied and Computational Harmonic Analysis, 30(2):129–150, 2011.
  15. The spectral graph wavelet transform: Fundamental theory and fast computation. In Vertex-Frequency Analysis of Graph Signals, pp.  141–175. Springer, 2018.
  16. Sparse coding and dictionary learning for symmetric positive definite matrices: A kernel approach. In Computer Vision–ECCV 2012: 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part II 12, pp.  216–229. Springer, 2012.
  17. From manifold to manifold: Geometry-aware dimensionality reduction for spd matrices. In Computer Vision–ECCV 2014: 13th European Conference, Zurich, Switzerland, September 6-12, 2014, Proceedings, Part II 13, pp. 17–32. Springer, 2014.
  18. A riemannian network for spd matrix learning. In Proceedings of the AAAI Conference on Artificial Intelligence, volume 31, 2017.
  19. Log-euclidean metric learning on symmetric positive definite manifold with application to image set classification. In International Conference on Machine Learning, pp. 720–729. PMLR, 2015.
  20. Matrix backpropagation for deep networks with structured layers. In Proceedings of the IEEE International Conference on Computer Vision, pp.  2965–2973, 2015.
  21. Brainnetcnn: Convolutional neural networks for brain networks; towards predicting neurodevelopment. NeuroImage, 146:1038–1049, 2017.
  22. Semi-supervised classification with graph convolutional networks. In International Conference on Learning Representations, 2017.
  23. Diagnostic power of default mode network resting state fmri in the detection of alzheimer’s disease. Neurobiology of Aging, 33(3):466–478, 2012.
  24. Oasis-3: longitudinal neuroimaging, clinical, and cognitive dataset for normal aging and alzheimer disease. MedRxiv, pp.  2019–12, 2019.
  25. The relationship between neuropsychiatric symptoms and default-mode network connectivity in alzheimer’s disease. Psychiatry Investigation, 17(7):662, 2020.
  26. Mallat, S. Group invariant scattering. Communications on Pure and Applied Mathematics, 65(10):1331–1398, 2012.
  27. The default mode network in healthy aging and alzheimer’s disease. International Journal of Alzheimer’s Disease, 2011, 2011.
  28. Mollai, S. Recursive interferometric representations. In 2010 18th European Signal Processing Conference, pp. 716–720. IEEE, 2010.
  29. Geometric constraints on human brain function. Nature, pp.  1–9, 2023.
  30. A riemannian framework for tensor computing. International Journal of Computer Vision, 66:41–66, 2006.
  31. Geometric scattering on manifolds. arXiv preprint arXiv:1812.06968, 2018.
  32. Geometric wavelet scattering networks on compact riemannian manifolds. In Mathematical and Scientific Machine Learning, pp. 570–604. PMLR, 2020.
  33. Manifold learning on brain functional networks in aging. Medical Image Analysis, 20(1):52–60, 2015.
  34. Validation of cross-sectional and longitudinal combat harmonization methods for magnetic resonance imaging data on a travelling subject cohort. Neuroimage: Reports, 2(4):100136, 2022.
  35. Structure-function coupling in the human connectome: A machine learning approach. Neuroimage, 226:117609, 2021.
  36. Masked label prediction: Unified message passing model for semi-supervised classification. arXiv preprint arXiv:2009.03509, 2020.
  37. Shuman, D. I. Localized spectral graph filter frames: A unifying framework, survey of design considerations, and numerical comparison. IEEE Signal Processing Magazine, 37(6):43–63, 2020.
  38. The emerging field of signal processing on graphs: Extending high-dimensional data analysis to networks and other irregular domains. IEEE Signal Processing Magazine, 30(3):83–98, 2013.
  39. Terras, A. Harmonic analysis on symmetric spaces and applications II. Springer Science & Business Media, 2012.
  40. Effects of data geometry in early deep learning. Advances in Neural Information Processing Systems, 35:30099–30113, 2022.
  41. Mlp-mixer: An all-mlp architecture for vision. Advances in Neural Information Processing Systems, 34:24261–24272, 2021.
  42. Automated anatomical labeling of activations in spm using a macroscopic anatomical parcellation of the mni mri single-subject brain. Neuroimage, 15(1):273–289, 2002.
  43. Graph attention networks. arXiv preprint arXiv:1710.10903, 2017.
  44. Covariance discriminative learning: A natural and efficient approach to image set classification. In 2012 IEEE Conference on Computer Vision and Pattern Recognition, pp.  2496–2503. IEEE, 2012.
  45. Collective dynamics of ‘small-world’networks. Nature, 393(6684):440–442, 1998.
  46. Impact of the alzheimer’s disease neuroimaging initiative, 2004 to 2014. Alzheimer’s & Dementia, 11(7):865–884, 2015.
  47. How powerful are graph neural networks? arXiv preprint arXiv:1810.00826, 2018.
  48. Re-visiting riemannian geometry of symmetric positive definite matrices for the analysis of functional connectivity. Neuroimage, 225:117464, 2021.
Citations (1)

Summary

No one has generated a summary of this paper yet.

Paper to Video (Beta)

No one has generated a video about this paper yet.

Whiteboard

No one has generated a whiteboard explanation for this paper yet.

Open Problems

We haven't generated a list of open problems mentioned in this paper yet.

Continue Learning

We haven't generated follow-up questions for this paper yet.

Collections

Sign up for free to add this paper to one or more collections.

Tweets

Sign up for free to view the 1 tweet with 2 likes about this paper.