Siamese Networks with Soft Labels for Unsupervised Lesion Detection and Patch Pretraining on Screening Mammograms
Abstract: Self-supervised learning has become a popular way to pretrain a deep learning model and then transfer it to perform downstream tasks. However, most of these methods are developed on large-scale image datasets that contain natural objects with clear textures, outlines, and distinct color contrasts. It remains uncertain whether these methods are equally effective for medical imaging, where the regions of interest often blend subtly and indistinctly with the surrounding tissues. In this study, we propose an alternative method that uses contralateral mammograms to train a neural network to encode similar embeddings when a pair contains both normal images and different embeddings when a pair contains normal and abnormal images. Our approach leverages the natural symmetry of human body as weak labels to learn to distinguish abnormal lesions from background tissues in a fully unsupervised manner. Our findings suggest that it's feasible by incorporating soft labels derived from the Euclidean distances between the embeddings of the image pairs into the Siamese network loss. Our method demonstrates superior performance in mammogram patch classification compared to existing self-supervised learning methods. This approach not only leverages a vast amount of image data effectively but also minimizes reliance on costly labels, a significant advantage particularly in the field of medical imaging.
- “ImageNet: A large-scale hierarchical image database” In 2009 IEEE Conference on Computer Vision and Pattern Recognition, 2009, pp. 248–255 DOI: 10.1109/CVPR.2009.5206848
- Iqbal H. Sarker “Deep learning: A comprehensive overview on techniques, taxonomy, applications and Research Directions” In SN Computer Science 2.6, 2021 DOI: 10.1007/s42979-021-00815-1
- Heang-Ping Chan, Lubomir M. Hadjiiski and Ravi K. Samala “Computer-aided diagnosis in the era of deep learning” In Medical Physics 47.5, 2020, pp. e218–e227 DOI: https://doi.org/10.1002/mp.13764
- “Improving Crowdsourcing-Based Image Classification Through Expanded Input Elicitation and Machine Learning” In Frontiers in Artificial Intelligence 5, 2022 DOI: 10.3389/frai.2022.848056
- “Preparing Medical Imaging Data for Machine Learning” PMID: 32068507 In Radiology 295.1, 2020, pp. 4–15 DOI: 10.1148/radiol.2020192224
- “Hurdles to Artificial Intelligence Deployment: Noise in Schemas and “Gold” Labels” In Radiology: Artificial Intelligence 5.2, 2023, pp. e220056 DOI: 10.1148/ryai.220056
- “Self-supervised learning: A succinct review” In Archives of Computational Methods in Engineering 30.4, 2023, pp. 2761–2775 DOI: 10.1007/s11831-023-09884-2
- “Self-Supervised Representation Learning: Introduction, advances, and challenges” In IEEE Signal Processing Magazine 39.3, 2022, pp. 42–62 DOI: 10.1109/MSP.2021.3134634
- “Self-supervised learning methods and applications in Medical Imaging Analysis: A survey” In PeerJ Computer Science 8, 2022 DOI: 10.7717/peerj-cs.1045
- “Self-Supervised Deep Learning to Enhance Breast Cancer Detection on Screening Mammography” In arXiv preprint arXiv:2203.08812, 2022
- Saleh Albelwi “Survey on Self-Supervised Learning: Auxiliary Pretext Tasks and Contrastive Learning Methods in Imaging” In Entropy 24.4, 2022 DOI: 10.3390/e24040551
- “A Simple Framework for Contrastive Learning of Visual Representations” In arXiv preprint arXiv:2002.05709, 2020
- “Bootstrap Your Own Latent: A New Approach to Self-Supervised Learning” In arXiv preprint arXiv:2006.07733, 2020
- S. Chopra, R. Hadsell and Y. LeCun “Learning a similarity metric discriminatively, with application to face verification” In 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR’05) 1, 2005, pp. 539–546 vol. 1 DOI: 10.1109/CVPR.2005.202
- Florian Schroff, Dmitry Kalenichenko and James Philbin “FaceNet: A Unified Embedding for Face Recognition and Clustering” In arXiv preprint arXiv:1503.03832, 2015
- “Feature fusion Siamese network for breast cancer detection comparing current and prior mammograms” In Medical Physics 49.6, 2022, pp. 3654–3669 DOI: https://doi.org/10.1002/mp.15598
- “A Survey of Label-noise Representation Learning: Past, Present and Future” In ArXiv abs/2011.04406, 2020 URL: https://api.semanticscholar.org/CorpusID:226282258
- “Unsupervised label noise modeling and loss correction” In ArXiv abs/1904.11238, 2019 URL: https://api.semanticscholar.org/CorpusID:131777002
- Junnan Li, Richard Socher and Steven C.H. Hoi “DivideMix: Learning with Noisy Labels as Semi-supervised Learning” In International Conference on Learning Representations, 2020 URL: https://openreview.net/forum?id=HJgExaVtwr
- “Scikit-learn: Machine Learning in Python” In Journal of Machine Learning Research 12, 2011, pp. 2825–2830
- “Deep Residual Learning for Image Recognition” In 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2016, pp. 770–778 DOI: 10.1109/CVPR.2016.90
- “VinDr-Mammo: A large-scale benchmark dataset for computer-aided diagnosis in full-field digital mammography” In medRxiv, 2022 DOI: 10.1101/2022.03.07.22272009
- “OPTIMAM Mammography Image Database: A Large-Scale Resource of Mammography Images and Clinical Data” PMID: 33937853 In Radiology: Artificial Intelligence 3, 2021, pp. e200103 DOI: 10.1148/ryai.2020200103
- “SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research” In Journal of Digital Imaging 31, 2017, pp. 290–303 DOI: https://doi.org/10.1007/s10278-017-0037-8
- Boris Ginsburg, Igor Gitman and Yang You “Large Batch Training of Convolutional Networks with Layer-wise Adaptive Rate Scaling”, 2018 URL: https://openreview.net/forum?id=rJ4uaX2aW
- “Viualizing data using t-SNE” In Journal of Machine Learning Research 9, 2008, pp. 2579–2605
- “UMAP: Uniform Manifold Approximation and Projection” In Journal of Open Source Software 3.29 The Open Journal, 2018, pp. 861 DOI: 10.21105/joss.00861
- Diederik P. Kingma and Jimmy Ba “Adam: A Method for Stochastic Optimization” In CoRR abs/1412.6980, 2014 URL: https://api.semanticscholar.org/CorpusID:6628106
- “Breast cancer early detection: a phased approach to implementation” In Cancer 126.10, 2020, pp. 2379–2393
Paper Prompts
Sign up for free to create and run prompts on this paper.