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An adaptation of InfoMap to absorbing random walks using absorption-scaled graphs

Published 21 Dec 2021 in cs.SI, cs.LG, math.PR, nlin.AO, and physics.soc-ph | (2112.10953v4)

Abstract: InfoMap is a popular approach to detect densely connected "communities" of nodes in networks. To detect such communities, InfoMap uses random walks and ideas from information theory. Motivated by the dynamics of disease spread on networks, whose nodes can have heterogeneous disease-removal rates, we adapt InfoMap to absorbing random walks. To do this, we use absorption-scaled graphs (in which edge weights are scaled according to absorption rates) and Markov time sweeping. One of our adaptations of InfoMap converges to the standard version of InfoMap in the limit in which the node-absorption rates approach $0$. We demonstrate that the community structure that one obtains using our adaptations of InfoMap can differ markedly from the community structure that one detects using methods that do not account for node-absorption rates. We also illustrate that the community structure that is induced by heterogeneous absorption rates can have important implications for susceptible-infected-recovered (SIR) dynamics on ring-lattice networks. For example, in some situations, the outbreak duration is maximized when a moderate number of nodes have large node-absorption rates.

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References (46)
  1. Conservation under uncertainty: Optimal network protection strategies for worst-case disturbance events. Journal of Applied Ecology, 52(6):1588–1597, 2015.
  2. H. Andersson and T. Britton. Stochastic epidemic models and their statistical analysis, volume 151. Springer Science & Business Media, 2012.
  3. Node classification in social networks. Social Network Data Analytics, pages 115–148, 2011.
  4. Community detection and visualization of networks with the Map Equation framework. In Measuring Scholarly Impact, pages 3–34. Springer-Verlag, Heidelberg, Germany, 2014.
  5. Mathematical Models in Epidemiology. Springer-Verlag, Heidelberg, Germany, 2019.
  6. Elements of Information Theory. John Wiley & Sons, Hoboken, NJ, USA, 2012.
  7. Transduction on directed graphs via absorbing random walks. IEEE Transactions on Pattern Analysis and Machine Intelligence, 40(7):1770–1784, 2017.
  8. Stability of graph communities across time scales. Proceedings of the National Academy of Sciences of the United States of America, 107(29):12755–12760, 2010.
  9. Mapping higher-order network flows in memory and multilayer networks with Infomap. Algorithms, 10(4):112, 2017.
  10. A framework for linking dispersal biology to connectivity across landscapes. Landscape Ecology, 38:2487–2500, 2023.
  11. Towards a unified framework for connectivity that disentangles movement and mortality in space and time. Ecology Letters, 22(10):1680–1689, 2019.
  12. S. Fortunato and D. Hric. Community detection in networks: A user guide. Physics Reports, 659:1–44, 2016.
  13. D. T. Gillespie. Exact stochastic simulation of coupled chemical reactions. The Journal of Physical Chemistry, 81(25):2340–2361, 1977.
  14. Absorbing random walks interpolating between centrality measures on complex networks. Physical Review E, 101(1):012302, 2020.
  15. Information propagation on modular networks. Physical Review E, 73(3):035103, 2006.
  16. A generalized inverse for graphs with absorption. Linear Algebra and its Applications, 537:118–147, 2018.
  17. Think locally, act locally: Detection of small, medium-sized, and large communities in large networks. Physical Review E, 91(1):012821, 2015.
  18. A local perspective on community structure in multilayer networks. Network Science, 5(2):144–163, 2017.
  19. Finite Markov Chains: With a New Appendix “Generalization of a Fundamental Matrix”. Springer-Verlag, Heidelberg, Germany, 1983.
  20. Efficient community detection of network flows for varying Markov times and bipartite networks. Physical Review E, 93(3):032309, 2016.
  21. On the use of Markov chains for epidemic modeling on networks. arXiv preprint arXiv:2207.02737, 2022.
  22. Mathematics of Epidemics on Networks: From Exact to Approximate Models. Springer International Publishing, Cham, Switzerland, 2017.
  23. Laplacian dynamics and multiscale modular structure in networks. arXiv preprint arXiv:0812.1770, 2008.
  24. Neighborhood socioeconomic inequality based on everyday mobility predicts COVID-19 infection in San Francisco, Seattle, and Wisconsin. Science Advances, 8(7):eabl3825, 2022.
  25. Random walks and diffusion on networks. Physics Reports, 716:1–58, 2017.
  26. D. Mistry et al. Inferring high-resolution human mixing patterns for disease modeling. Nature Communications, 12(1):323, 2021.
  27. M. E. J. Newman. Models of the small world. Journal of Statistical Physics, 101(3):819–841, 2000.
  28. M. E. J. Newman. Spread of epidemic disease on networks. Physical Review E, 66(1):016128, 2002.
  29. M. E. J. Newman. Networks. Oxford University Press, Oxford, UK, second edition, 2018.
  30. Epidemic processes in complex networks. Reviews of Modern Physics, 87(3):925, 2015.
  31. T. P. Peixoto. Bayesian stochastic blockmodeling. In Patrick Doreian, Vladimir Batagelj, and Anuska Ferligoj, editors, Advances in Network Clustering and Blockmodeling, pages 289–332. John Wiley & Sons, Inc., Hoboken, NJ, USA, 2019.
  32. M. A. Porter. Small-world network. Scholarpedia, 7(2):1739, 2012.
  33. Communities in networks. Notices of the American Mathematical Society, 56(9):1082–1097, 1164–1166, 2009.
  34. O. Ratmann et al. Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities: A population-based study in Rakai, Uganda. The Lancet HIV, 7(3):e173–e183, 2020.
  35. The map equation. The European Physical Journal — Special Topics, 178(1):13–23, 2009.
  36. M. Rosvall and C. T. Bergstrom. Maps of random walks on complex networks reveal community structure. Proceedings of the National Academy of Sciences of the United States of America, 105(4):1118–1123, 2008.
  37. N. W. Ruktanonchai et al. Identifying malaria transmission foci for elimination using human mobility data. PLOS Computational Biology, 12(4):1–19, 04 2016.
  38. M. Salathé and J. H. Jones. Dynamics and control of diseases in networks with community structure. PLoS Computational Biology, 6(4):e1000736, 2010.
  39. Encoding dynamics for multiscale community detection: Markov time sweeping for the map equation. Physical Review E, 86(2):026112, 2012.
  40. C. E. Shannon. A mathematical theory of communication. Bell System Technical Journal, 27(3):379–423, 1948.
  41. Community detection with the map equation and Infomap: Theory and applications. arXiv preprint arXiv:2311.04036, 2023.
  42. Epidemic spreading on complex networks with community structures. Scientific Reports, 6:29748, 2016.
  43. From Louvain to Leiden: guaranteeing well-connected communities. Scientific Reports, 9:5233, 2019.
  44. Reproduction numbers and sub-threshold endemic equilibria for compartmental models of disease transmission. Mathematical Biosciences, 180:29–48, 2002.
  45. Virality prediction and community structure in social networks. Scientific Reports, 3:2522, 2013.
  46. Improving diversity in ranking using absorbing random walks. In Human Language Technologies 2007: The Conference of the North American Chapter of the Association for Computational Linguistics; Proceedings of the Main Conference, pages 97–104, 2007.

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