Papers
Topics
Authors
Recent
Search
2000 character limit reached

U-Time: A Fully Convolutional Network for Time Series Segmentation Applied to Sleep Staging

Published 24 Oct 2019 in cs.LG, eess.SP, and stat.ML | (1910.11162v1)

Abstract: Neural networks are becoming more and more popular for the analysis of physiological time-series. The most successful deep learning systems in this domain combine convolutional and recurrent layers to extract useful features to model temporal relations. Unfortunately, these recurrent models are difficult to tune and optimize. In our experience, they often require task-specific modifications, which makes them challenging to use for non-experts. We propose U-Time, a fully feed-forward deep learning approach to physiological time series segmentation developed for the analysis of sleep data. U-Time is a temporal fully convolutional network based on the U-Net architecture that was originally proposed for image segmentation. U-Time maps sequential inputs of arbitrary length to sequences of class labels on a freely chosen temporal scale. This is done by implicitly classifying every individual time-point of the input signal and aggregating these classifications over fixed intervals to form the final predictions. We evaluated U-Time for sleep stage classification on a large collection of sleep electroencephalography (EEG) datasets. In all cases, we found that U-Time reaches or outperforms current state-of-the-art deep learning models while being much more robust in the training process and without requiring architecture or hyperparameter adaptation across tasks.

Citations (212)

Summary

  • The paper presents U-Time, a fully convolutional network that automates sleep staging with performance surpassing traditional recurrent models.
  • It employs a U-Net-inspired encoder-decoder design that segments EEG data point-wise without complex recurrent tuning.
  • Robust performance across varied datasets suggests its potential to streamline clinical sleep studies and extend to other biomedical signals.

U-Time: A Fully Convolutional Network for Time Series Segmentation Applied to Sleep Staging

In this paper, the authors propose U-Time, a novel fully feed-forward deep learning approach for physiological time series segmentation, specifically applied to the field of sleep staging. U-Time represents a significant step forward in the context of automating sleep stage classification—a task typically characterized by laborious manual segmentation from electroencephalography (EEG) data—by introducing a fully convolutional network model based on the U-Net architecture.

Methodology

U-Time addresses common challenges in recurrent-based time series analysis, such as complexity in tuning and optimization, by employing a purely convolutional architecture. By eschewing recurrent components, U-Time can be more easily applied without task-specific modifications across varied datasets. Its key innovation lies in applying principles from image segmentation, specifically U-Net, to time series data. The network implicitly assigns classifications to each time point of the input signal and subsequently aggregates these over fixed temporal intervals to form the final stage predictions.

The model architecture consists of a feed-forward encoder-decoder network, with the encoder responsible for mapping the input sequence to high-level feature representations and the decoder functioning to provide dense, point-wise segmentations. A segment classifier uses these dense outputs to classify the input sequence as sleep stages at a chosen temporal resolution. Importantly, the system exhibits flexibility in its segmentation frequency, capable of outputting at scales finer than those at which training labels were provided, potentially offering more granular insights during inference.

Experiments and Results

The U-Time model was evaluated on a variety of public and private datasets encompassing different patient populations and recording conditions, including variations in EEG channel configurations, and presence of sleep disorders. Across these datasets, U-Time consistently achieved or exceeded the performance of existing state-of-the-art models, which often included task-specific tuning of convolutional and recurrent network combinations—proving both robust and adaptable.

Notably, U-Time was assessed using a fixed architecture without dataset-specific tuning, underscoring its robustness. For numerical performance, U-Time demonstrated strong F1 scores across sleep stages and surpassed established recurrent architectures like DeepSleepNet, which are more sensitive to hyperparameter changes.

Implications and Future Directions

The findings reveal significant implications for both clinical practice and future research. From a clinical perspective, U-Time's robustness and efficacy could streamline sleep studies and aid in early sleep disorder diagnosis, thus substantially reducing manual workload. The capability to infer sleep stages at increased temporal resolutions presents new possibilities for more detailed sleep pattern analysis.

Theoretically, U-Time paves the way for further exploration of feed-forward networks in time series classification tasks beyond sleep staging. Its inherent flexibility and high performance underscore the potential for broad applicability in physiological signal analysis, such as ECG or other biomedical signals, facilitating advancements in automated diagnosis tools.

In conclusion, the authors provide strong evidence that fully convolutional networks can serve as robust alternatives to recurrent architectures for time series segmentation tasks, promising smoother application across varied datasets without compromising performance. This work sets a precedent for future developments in AI-mediated physiological signal processing and segmentation.

Paper to Video (Beta)

Whiteboard

No one has generated a whiteboard explanation for this paper yet.

Open Problems

We haven't generated a list of open problems mentioned in this paper yet.

Collections

Sign up for free to add this paper to one or more collections.