Abstract: Using 5.2 fb<sup>−1 e<sup>+</sup>e<sup>− annihilation data samples collected with the BESIII detector, we measure the cross sections of e<sup>+e<sup>−</sup></sup>→KS<sup>0</sup>K<sup>±</sup>π<sup>∓</sup>π<sup>0 and KS<sup>0K<sup>±π<sup>∓η at center-of-mass energies from $3.90$ to $4.60$ GeV. In addition, we search for the charmonium-like resonance Y(4260) decays into KS<sup>0K<sup>±π<sup>∓π<sup>0 and KS<sup>0K<sup>±π<sup>∓η, and Zc<sup>0,±(3900) decays into KS<sup>0K<sup>±π<sup>∓,0 and KS<sup>0K<sup>±η. Corresponding upper limits are provided since no clear signal is observed.