PC algorithm for Gaussian copula graphical models

Abstract: The PC algorithm uses conditional independence tests for model selection in graphical modeling with acyclic directed graphs. In Gaussian models, tests of conditional independence are typically based on Pearson correlations, and high-dimensional consistency results have been obtained for the PC algorithm in this setting. We prove that high-dimensional consistency carries over to the broader class of Gaussian copula or \textit{nonparanormal} models when using rank-based measures of correlation. For graphs with bounded degree, our result is as strong as prior Gaussian results. In simulations, the Rank PC' algorithm works as well as thePearson PC' algorithm for normal data and considerably better for non-normal Gaussian copula data, all the while incurring a negligible increase of computation time. Simulations with contaminated data show that rank correlations can also perform better than other robust estimates considered in previous work when the underlying distribution does not belong to the nonparanormal family.