FSpGEMM: An OpenCL-based HPC Framework for Accelerating General Sparse Matrix-Matrix Multiplication on FPGAs

Abstract: General sparse matrix-matrix multiplication (SpGEMM) is an integral part of many scientific computing, high-performance computing (HPC), and graph analytic applications. This paper presents a new compressed sparse vector (CSV) format for representing sparse matrices and FSpGEMM, an OpenCL-based HPC framework for accelerating general sparse matrix-matrix multiplication on FPGAs. The proposed FSpGEMM framework includes an FPGA kernel implementing a throughput-optimized hardware architecture based on Gustavson's algorithm and a host program implementing pre-processing functions for converting input matrices to the CSV format tailored for the proposed architecture. FSpGEMM utilizes a new buffering scheme tailored to Gustavson's algorithm. We compare FSpGEMM implemented on an Intel Arria 10 GX FPGA development board with Intel Math Kernel Library (MKL) implemented on an Intel Xeon E5-2637 CPU and cuSPARSE on an NVIDIA GTX TITAN X GPU, respectively, for multiplying a set of sparse matrices selected from SuiteSparse Matrix Collection. The experiment results show that the proposed FSpGEMM solution achieves on average 4.9x and 1.7x higher performance with 31.9x and 13.1x lower energy consumption per SpGEMM computation than the CPU and GPU implementations, respectively.