Maximum likelihood for high-noise group orbit estimation and single-particle cryo-EM

Abstract: Motivated by applications to single-particle cryo-electron microscopy (cryo-EM), we study several problems of function estimation in a high noise regime, where samples are observed after random rotation and possible linear projection of the function domain. We describe a stratification of the Fisher information eigenvalues according to transcendence degrees of graded pieces of the algebra of group invariants, and we relate critical points of the log-likelihood landscape to a sequence of moment optimization problems, extending previous results for a discrete rotation group without projections. We then compute the transcendence degrees and forms of these optimization problems for several examples of function estimation under $SO(2)$ and $SO(3)$ rotations, including a simplified model of cryo-EM as introduced by Bandeira, Blum-Smith, Kileel, Perry, Weed, and Wein. We affirmatively resolve conjectures that $3^\text{rd}$-order moments are sufficient to locally identify a generic signal up to its rotational orbit in these examples. For low-dimensional approximations of the electric potential maps of two small protein molecules, we empirically verify that the noise-scalings of the Fisher information eigenvalues conform with our theoretical predictions over a range of SNR, in a model of $SO(3)$ rotations without projections.