Video-rate large-scale imaging with Multi-Z confocal microscopy

Abstract: Fast, volumetric imaging over large scales has been a long-standing goal in biological microscopy. Scanning techniques such as fluorescence confocal microscopy can acquire 2D images at high resolution and high speed, but extending the acquisition to multiple planes at different depths requires an axial scanning mechanism that drastically reduces the acquisition speed. To address this challenge, we report an augmented variant of confocal microscopy where the key innovation consists to use a series of reflecting pinholes axially distributed in the detection plane, each one probing a different depth within the sample. As no axial scanning mechanism is involved, our technique provides simultaneous multiplane imaging over fields of view larger than a millimeter at video-rate. We demonstrate the general applicability of our technique to neuronal imaging of both Caenorhabditis elegans and mouse brains in-vivo.