Adding smoothing splines to the SAM model improves stock assessment

Abstract: The stock assessment model SAM contains a large number of age-dependent parameters that must be manually grouped together to obtain robust inference. This can make the model selection process slow, non-extensive and highly subjective, while producing unrealistic looking parameter estimates with discrete jumps. We propose to model age-dependent SAM parameters using smoothing spline functions. This can lead to more smooth parameter estimates, while speeding up and making the model selection process more automatic and less subjective. We develop different spline models and compare them with already existing SAM models for a selection of 17 different fish stocks, using cross- and forward-validation methods. The results show that our automated spline models overall outcompete the officially developed SAM models. We also demonstrate how the developed spline models can be employed as a diagnostics tool for improving and better understanding properties of the officially developed SAM models.