Wave-driven phase wave patterns in a ring of FitzHugh-Nagumo oscillators (2404.13363v2)
Abstract: We explore a biomimetic model that simulates a cell, with the internal cytoplasm represented by a two-dimensional circular domain and the external cortex by a surrounding ring, both modeled using FitzHugh-Nagumo systems. The external ring is dynamically influenced by a pacemaker-driven wave originating from the internal domain, leading to the emergence of three distinct dynamical states based on the varying strengths of coupling. The range of dynamics observed includes phase patterning, the propagation of phase waves, and interactions between traveling and phase waves. A simplified linear model effectively explains the mechanisms behind the variety of phase patterns observed, providing insights into the complex interplay between a cell's internal and external environments.
- R. FitzHugh, “Impulses and physiological states in theoretical models of nerve membrane,” Biophysical Journal 1, 445–466 (1961).
- J. Nagumo, S. Arimoto, and S. Yoshizawa, “An active pulse transmission line simulating nerve axon,” Proceedings of the IRE 50, 2061–2070 (1962).
- C. Rocsoreanu, A. Georgescu, and N. Giurgiteanu, The FitzHugh-Nagumo Model, Vol. 10 (Springer Netherlands, 2000).
- H. McKean, “Nagumo’s equation,” Advances in Mathematics 4, 209–223 (1970).
- E. Meron, “Pattern formation in excitable media,” Physics Reports 218, 1–66 (1992).
- A. Winfree, “Alternative stable rotors in an excitable medium,” Physica D: Nonlinear Phenomena 49, 125–140 (1991).
- D. Cebrían-Lacasa, P. Parra-Rivas, D. Ruiz-Reynés, and L. Gelens, “Six decades of the fitzhugh-nagumo model: A guide through its spatio-temporal dynamics and influence across disciplines,” (2024), arXiv:2404.11403 [nlin.PS] .
- B. Novak and J. J. Tyson, “Numerical analysis of a comprehensive model of m-phase control in xenopus oocyte extracts and intact embryos,” Journal of cell science 106, 1153–1168 (1993).
- J. R. Pomerening, S. Y. Kim, and J. E. Ferrell, “Systems-level dissection of the cell-cycle oscillator: bypassing positive feedback produces damped oscillations,” Cell 122, 565–578 (2005).
- D. Gonze and A. Goldbeter, “A model for a network of phosphorylation–dephosphorylation cycles displaying the dynamics of dominoes and clocks,” Journal of theoretical biology 210, 167–186 (2001).
- J. De Boeck, J. Rombouts, and L. Gelens, “A modular approach for modeling the cell cycle based on functional response curves,” PLoS computational biology 17, e1009008 (2021).
- J. Rombouts, S. Verplaetse, and L. Gelens, “The ups and downs of biological oscillators: a comparison of time-delayed negative feedback mechanisms,” Journal of The Royal Society Interface 20, 20230123 (2023).
- W. M. Bement, M. Leda, A. M. Moe, A. M. Kita, M. E. Larson, A. E. Golding, C. Pfeuti, K.-C. Su, A. L. Miller, A. B. Goryachev, et al., “Activator–inhibitor coupling between rho signalling and actin assembly makes the cell cortex an excitable medium,” Nature cell biology 17, 1471–1483 (2015).
- A. Michaud, M. Leda, Z. T. Swider, S. Kim, J. He, J. Landino, J. R. Valley, J. Huisken, A. B. Goryachev, G. von Dassow, et al., “A versatile cortical pattern-forming circuit based on rho, f-actin, ect2, and rga-3/4,” Journal of Cell Biology 221, e202203017 (2022).
- W. M. Bement, A. B. Goryachev, A. L. Miller, and G. von Dassow, “Patterning of the cell cortex by rho gtpases,” Nature Reviews Molecular Cell Biology , 1–19 (2024).
- J. J. Tyson and J. P. Keener, “Singular perturbation theory of traveling waves in excitable media (a review),” Physica D: Nonlinear Phenomena 32, 327–361 (1988).
- A. T. Winfree, The geometry of biological time, Vol. 2 (Springer, 1980).
- M. Stich, A. S. Mikhailov, and Y. Kuramoto, “Self-organized pacemakers and bistability of pulses in an excitable medium,” Physical Review E 79, 026110 (2009).
- S. Di Talia and M. Vergassola, “Waves in embryonic development,” Annual review of biophysics 51, 327–353 (2022).
- C. Beta and K. Kruse, “Intracellular oscillations and waves,” Annual Review of Condensed Matter Physics 8, 239–264 (2017).
- O. Puls, D. Ruiz-Reynes, F. Tavella, M. Jin, Y. Kim, L. Gelens, and Q. Yang, “Mitotic waves in frog egg extracts: Transition from phase waves to trigger waves,” bioRxiv , 2024–01 (2024).
- S. Rankin and M. W. Kirschner, “The surface contraction waves of xenopus eggs reflect the metachronous cell-cycle state of the cytoplasm,” Current Biology 7, 451–454 (1997).
- K. Hara, P. Tydeman, and M. Kirschner, “A cytoplasmic clock with the same period as the division cycle in xenopus eggs.” Proceedings of the National Academy of Sciences 77, 462–466 (1980).
- G. A. Anderson, L. Gelens, J. C. Baker, and J. E. Ferrell, “Desynchronizing embryonic cell division waves reveals the robustness of xenopus laevis development,” Cell reports 21, 37–46 (2017).
- J. Bischof, C. A. Brand, K. Somogyi, I. Májer, S. Thome, M. Mori, U. S. Schwarz, and P. Lénárt, “A cdk1 gradient guides surface contraction waves in oocytes,” Nature communications 8, 849 (2017).
- M. C. Wigbers, T. H. Tan, F. Brauns, J. Liu, S. Z. Swartz, E. Frey, and N. Fakhri, “A hierarchy of protein patterns robustly decodes cell shape information,” Nature Physics 17, 578–584 (2021).
- Z. Wu, M. Su, C. Tong, M. Wu, and J. Liu, “Membrane shape-mediated wave propagation of cortical protein dynamics,” Nature communications 9, 136 (2018).
- S. Whitelam, T. Bretschneider, and N. J. Burroughs, “Transformation from spots to waves in a model of actin pattern formation,” Physical review letters 102, 198103 (2009).
- Y. Miao and O. Pourquié, “Cellular and molecular control of vertebrate somitogenesis,” Nature Reviews Molecular Cell Biology , 1–17 (2024).
- E. J. Reusser and R. J. Field, “The transition from phase waves to trigger waves in a model of the zhabotinskii reaction,” Journal of the American Chemical Society 101, 1063–1071 (1979).
- P. Ortoleva and J. Ross, “Phase waves in oscillatory chemical reactions,” The Journal of Chemical Physics 58, 5673–5680 (1973).
- S. Chen, Z. Li, Y. Zhang, H. Cheng, and J. Tian, “Phase manipulation of electromagnetic waves with metasurfaces and its applications in nanophotonics,” Advanced Optical Materials 6, 1800104 (2018).
- R. Hertel, W. Wulfhekel, and J. Kirschner, “Domain-wall induced phase shifts in spin waves,” Physical review letters 93, 257202 (2004).
- “Gitlab repository,” https://gitlab.kuleuven.be/gelenslab/publications/fhn_driven_phase_phenomena.
Sponsor
Paper Prompts
Sign up for free to create and run prompts on this paper using GPT-5.
Top Community Prompts
Collections
Sign up for free to add this paper to one or more collections.