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Getting Genetic Ancestry Right for Science and Society (2110.05987v2)

Published 12 Oct 2021 in q-bio.PE

Abstract: There is a scientific and ethical imperative to embrace a multidimensional, continuous view of ancestry and move away from continental ancestry categories

Citations (126)

Summary

An Expert Critique of "Getting Genetic Ancestry Right for Science and Society"

The paper "Getting Genetic Ancestry Right for Science and Society," authored by Lewis et al., presents a compelling argument for the reconceptualization of genetic ancestry in both scientific research and societal applications. The authors underscore the necessity for a shift from the conventional use of continental ancestry categories towards a more nuanced multidimensional view. They contend that genetic ancestry should be perceived as a continuous construct rather than constrained by categorical labels which may contribute to misunderstandings and perpetuate harmful associations with racial classifications.

Key Arguments and Findings

The authors highlight several critical issues with the current reliance on continental ancestry categories:

  1. Ambiguity in Definitions: The paper points out a lack of consensus on what constitutes genetic ancestry. Statistical methodologies in genomics often result in outputs labeled as genetic ancestry, yet many of these outputs may be more accurately described as measures of genetic similarity among participants within a given dataset. This ambiguity can mislead interpretations and applications of genetic ancestry information.
  2. Misrepresentation of Human Genetic Diversity: The categorical approach oversimplifies the complex tapestry of human genetics and demographic history. Visualizations, such as principal component analysis, often depict discrete clusters reflecting continental categories when reference populations are used. However, sampling from diverse real-world populations reveals a continuum of genetic variation, challenging the validity of such discrete categorizations.
  3. Temporal Over-simplification: The use of continental categories imposes a static snapshot on the dynamic history of human ancestry. Human genetic ancestry requires consideration of different temporal layers, as historical populations continuously intermingled, contrary to the constrained view framed by continental divisions.

Implications and Future Directions

The authors propose a series of changes to address these entrenched methodological and conceptual issues. They advocate for:

  • More Complex Models: Researchers should employ models that better account for the continuum of genetic diversity, rather than relying on reductive categorical variables. This complexity aligns with the interdisciplinary nature required for a holistic understanding of human genetics.
  • Systems-Level Change: A transformation is necessary across the biomedical research ecosystem. This includes developing computational tools that avoid the need for categorical simplifications, creating educational resources for scientists and clinicians, and fostering interdisciplinary collaborations with impacted communities.
  • Adoption at Institutional Levels: Journal editors, professional societies, and funders should establish and enforce standards that promote complex understandings of ancestry. By critiquing the use of categorical variables in genetics research, these entities can help prevent continental ancestry categories from becoming a reified default akin to biological race.

The paper calls for a paradigm shift towards a multidimensional and continuous conceptualization of ancestry that reflects the intricate patterns of human evolution and intergroup connections. The authors underscore the significance of integrating historical narratives into genetic research to illuminate power dynamics and human group histories.

This nuanced approach could pave the way for an ethical and scientifically sound framework for future studies, particularly those investigating the links between genetics and health disparities. By advancing a continuous notion of genetic ancestry, the scientific community can foster research that more accurately reflects the complexities of human variation and mitigates the perpetuation of racial stereotypes in medical contexts.

Conclusion

The paper by Lewis et al. presents a thorough critique of current practices in genetic ancestry categorization, emphasizing the need for a sophisticated re-evaluation of what ancestry truly encompasses. It urges the scientific community to embrace methodologies and conceptual frameworks that reflect the continuous and multidimensional nature of human genetic history. Implementing these changes will require a concerted effort across multiple disciplines but holds the promise of more ethical and impactful scientific research.

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