Tree++: Truncated Tree Based Graph Kernels

Abstract: Graph-structured data arise ubiquitously in many application domains. A fundamental problem is to quantify their similarities. Graph kernels are often used for this purpose, which decompose graphs into substructures and compare these substructures. However, most of the existing graph kernels do not have the property of scale-adaptivity, i.e., they cannot compare graphs at multiple levels of granularities. Many real-world graphs such as molecules exhibit structure at varying levels of granularities. To tackle this problem, we propose a new graph kernel called Tree++ in this paper. At the heart of Tree++ is a graph kernel called the path-pattern graph kernel. The path-pattern graph kernel first builds a truncated BFS tree rooted at each vertex and then uses paths from the root to every vertex in the truncated BFS tree as features to represent graphs. The path-pattern graph kernel can only capture graph similarity at fine granularities. In order to capture graph similarity at coarse granularities, we incorporate a new concept called super path into it. The super path contains truncated BFS trees rooted at the vertices in a path. Our evaluation on a variety of real-world graphs demonstrates that Tree++ achieves the best classification accuracy compared with previous graph kernels.