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dynesty: A Dynamic Nested Sampling Package for Estimating Bayesian Posteriors and Evidences (1904.02180v1)

Published 3 Apr 2019 in astro-ph.IM and stat.CO

Abstract: We present dynesty, a public, open-source, Python package to estimate Bayesian posteriors and evidences (marginal likelihoods) using Dynamic Nested Sampling. By adaptively allocating samples based on posterior structure, Dynamic Nested Sampling has the benefits of Markov Chain Monte Carlo algorithms that focus exclusively on posterior estimation while retaining Nested Sampling's ability to estimate evidences and sample from complex, multi-modal distributions. We provide an overview of Nested Sampling, its extension to Dynamic Nested Sampling, the algorithmic challenges involved, and the various approaches taken to solve them. We then examine dynesty's performance on a variety of toy problems along with several astronomical applications. We find in particular problems dynesty can provide substantial improvements in sampling efficiency compared to popular MCMC approaches in the astronomical literature. More detailed statistical results related to Nested Sampling are also included in the Appendix.

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Summary

  • The paper introduces dynesty, a dynamic nested sampling package that adaptively allocates live points for efficient Bayesian inference.
  • It employs advanced sampling and geometric bounding strategies to robustly estimate both posteriors and evidences in multi-modal distributions.
  • Evaluations in astrophysical contexts demonstrate dynesty's superior performance over static nested sampling and MCMC methods.

Overview of dynesty: A Dynamic Nested Sampling Package

The paper "dynesty: A Dynamic Nested Sampling Package for Estimating Bayesian Posteriors and Evidences" presents a comprehensive overview of the dynesty package, which implements Dynamic Nested Sampling to facilitate Bayesian inference. This package, publicly accessible and written in Python, aims to estimate both Bayesian posteriors and evidences efficiently. Its architecture is designed to overcome certain limitations of traditional Markov Chain Monte Carlo (MCMC) methods and static Nested Sampling, particularly when dealing with complex, multi-modal distributions often encountered in astrophysical applications.

Nested Sampling vs. MCMC

Nested Sampling is advantageous over MCMC in several respects due to its ability to estimate the marginal likelihood (evidence) along with sampling from the posterior distribution. It can handle multi-modal distributions more robustly and provides more reliable stopping criteria than MCMC approaches, which can struggle to sample efficiently from jagged posteriors due to their reliance on burn-in phases and convergence diagnostics. However, traditional Nested Sampling keeps a fixed number of "live" points throughout the sampling process, potentially leading to inefficiencies in dynamically allocating computational resources.

Dynamic Nested Sampling

Dynamic Nested Sampling, as implemented in dynesty, addresses the rigidity of static Nested Sampling by allowing the number of live points to vary throughout the sampling process. This flexibility enables the algorithm to adaptively focus computational effort where it is most needed, enhancing the estimation of either the posterior or the evidence based on defined priorities. This feature is particularly effective in balancing between exploring the parameter space and exploiting regions of high posterior density, making it more akin to MCMC but without sacrificing the benefits of Nested Sampling.

Algorithmic Innovations

The core innovation of dynesty lies in its use of adaptive schemes for live point allocation, sampling methods, and bounding strategies. The sampling methods include uniform sampling, random walks, and slice sampling—each tailored for different dimensional regimes of the parameter space. Importantly, these methods are less sensitive to the exact size of the prior volumes, enhancing their robustness. Furthermore, dynesty introduces a variety of geometric bounding strategies, such as using single or multiple ellipsoids and overlapping spheres or cubes, to efficiently explore and sample from complex multi-modal spaces.

Performance and Applications

Through tests on toy problems such as Gaussian shells and the eggbox function, dynesty demonstrates competitive sampling efficiency and accuracy in evidence estimation compared to both static Nested Sampling and MCMC approaches. The paper also highlights the application of dynesty in astrophysical data analysis, including galaxy SED modeling and dust extinction mapping, where the method's robustness and efficiency significantly aid in handling the inherent complexities of the data.

Implications and Future Directions

The development of dynesty represents a significant advancement in the field of Bayesian computation, offering a versatile and efficient tool tailored to the needs of modern astrophysical research. As computational demands in various scientific fields continue to grow, the dynamic capabilities of dynesty could see broader applications beyond astronomy, particularly in areas requiring robust Bayesian evidence and posterior estimation from complex, high-dimensional datasets. Future developments in the package might focus on further optimizing sampling techniques and extending applicability to other domains requiring sophisticated model comparison and parameter estimation capabilities.

In conclusion, dynesty emerges as a highly efficient and adaptable package for Bayesian inference, bridging the gap between MCMC and static Nested Sampling through its dynamic approach. This paper provides a thorough theoretical foundation and practical demonstration of the package's capabilities, suggesting a promising future for its application in various scientific fields.

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