Critical slowing down and attractive manifold: a mechanism for dynamic robustness in yeast cell-cycle process (1811.09512v1)

Abstract: The biological processes that execute complex multiple functions, such as cell cycle, must ensure the order of sequential events and keep the dynamic robustness against various fluctuations. Here, we examine the dynamic mechanism and the fundamental structure to achieve these properties in the cell-cycle process of budding yeast Saccharomyces cerevisiae. We show that the budding yeast cell-cycle process behaves like an excitable system containing three well-coupled saddle-node bifurcations to execute DNA replication and mitosis events. The yeast cell-cycle regulatory network can be separated into G1/S phase module, early M module and late M phase module, where the positive feedbacks in each module and the interactions among the modules play important role. If the cell-cycle process operates near the critical points of the saddle-node bifurcations, there is a critical slowing down or ghost effect. This can provide the cell-cycle process with a sufficient duration for each event and an attractive manifold for the state checking of the completion of DNA replication and mitosis; moreover, the fluctuation in the early module/event is forbidden to transmit to the latter module/event. Our results suggest both a fundamental structure of cell-cycle regulatory network and a hint for the evolution of eukaryotic cell-cycle processes, from the dynamic checking mechanism to the molecule checkpoint pathway.