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Constrained-CNN losses for weakly supervised segmentation

Published 12 May 2018 in cs.CV | (1805.04628v2)

Abstract: Weakly-supervised learning based on, e.g., partially labelled images or image-tags, is currently attracting significant attention in CNN segmentation as it can mitigate the need for full and laborious pixel/voxel annotations. Enforcing high-order (global) inequality constraints on the network output (for instance, to constrain the size of the target region) can leverage unlabeled data, guiding the training process with domain-specific knowledge. Inequality constraints are very flexible because they do not assume exact prior knowledge. However, constrained Lagrangian dual optimization has been largely avoided in deep networks, mainly for computational tractability reasons. To the best of our knowledge, the method of [Pathak et al., 2015] is the only prior work that addresses deep CNNs with linear constraints in weakly supervised segmentation. It uses the constraints to synthesize fully-labeled training masks (proposals) from weak labels, mimicking full supervision and facilitating dual optimization. We propose to introduce a differentiable penalty, which enforces inequality constraints directly in the loss function, avoiding expensive Lagrangian dual iterates and proposal generation. From constrained-optimization perspective, our simple penalty-based approach is not optimal as there is no guarantee that the constraints are satisfied. However, surprisingly, it yields substantially better results than the Lagrangian-based constrained CNNs in [Pathak et al., 2015], while reducing the computational demand for training. By annotating only a small fraction of the pixels, the proposed approach can reach a level of segmentation performance that is comparable to full supervision on three separate tasks. While our experiments focused on basic linear constraints such as the target-region size and image tags, our framework can be easily extended to other non-linear constraints.

Citations (226)

Summary

  • The paper introduces a novel differentiable penalty term that integrates inequality constraints directly into CNN losses for weakly supervised segmentation.
  • The paper demonstrates that the method achieves a Dice Similarity Coefficient near 0.87, rivaling fully supervised models while drastically reducing annotation needs.
  • The paper highlights the approach's efficiency and adaptability by effectively combining weakly and fully annotated data within a hybrid training regime.

Constrained-CNN Losses for Weakly Supervised Segmentation

In the paper "Constrained-CNN Losses for Weakly Supervised Segmentation," the authors address a prevalent challenge in convolutional neural networks (CNNs) for segmentation tasks: the reliance on fully annotated datasets. The task of segmenting images, particularly in medical imaging, often demands detailed pixel-level annotations, an endeavor that is both time-consuming and resource-intensive. To alleviate these challenges, the authors propose a novel methodology for weakly supervised segmentation that leverages inequality constraints directly within the CNN loss function.

The primary contribution of the work lies in the introduction of a differentiable penalty term that incorporates inequality constraints without resorting to the computational complexities associated with traditional Lagrangian dual optimization methods. The approach eschews the need for dual optimization iterations and the creation of synthetic proposals, thus substantially reducing computational burdens while offering promising segmentation performance. Notably, the method contrasts with existing Lagrangian dual techniques, such as those proposed by Pathak et al., by foregoing explicit dual variable updates and instead embedding constraints within the stochastic gradient-based training inherently.

Methodology

The core of the paper's methodology centers on augmenting the conventional cross-entropy loss with an inequality constraint penalty. This penalty is designed to directly incorporate domain-specific knowledge regarding the size of target regions, translated into the constraints that guide the network's learning process. The method is applicable to a diverse set of constraints, ranging from enforcing the presence of objects in tagged images to bounding the size of segmented regions based on expected statistical properties.

The efficacy of this approach is empirically substantiated through experiments on several datasets, including tasks of segmenting cardiac images, vertebral bodies, and prostate regions from MRI scans. Remarkably, the constrained loss function enabled the CNN to achieve segmentation performance comparable to models trained with full supervision, whilst utilizing significantly fewer annotated data points.

Numerical Results and Comparisons

The authors provide extensive numerical results that highlight the strength of their approach. Employing only weakly annotated labels, the proposed constraint-based methods outperform traditional constrained CNN frameworks based on path-referenced Lagrangian approaches. For example, segmentation results using individual bounds reach a Dice Similarity Coefficient (DSC) close to full supervision (0.8708) while maintaining computational efficiency and reducing annotation efforts to a small fraction of the dataset.

A secondary focus of the paper is the hybrid training regime, where weakly annotated and fully annotated data are combined to further enhance performance, demonstrating adaptability and robustness across various levels of annotation availability.

Implications and Future Directions

The implications of this research extend beyond the immediate application to segmentation tasks in medical imaging. By reducing the dependency on fully annotated datasets, the proposed method facilitates more widespread application of CNNs in domains with limited labeled data. Moreover, the embedded constraint framework is inherently flexible and can potentially be extended to non-linear and more complex constraint formulations, thereby broadening its applicability to other challenging machine learning tasks.

For future exploration, the authors suggest integrating more complex statistics or invariants, such as fractional region moments and other shape-based constraints, to further leverage non-linear domain knowledge within the segmentation process.

Ultimately, this work represents a significant step forward in bridging the gap between weak and full supervision in image segmentation, with promising ramifications for practical implementations in AI-driven imaging analysis systems. The proposed direct penalty-based approach not only achieves competitive performance but also underscores a viable path toward scalable and efficient deep learning deployment.

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