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Deep Learning for Multi-Task Medical Image Segmentation in Multiple Modalities (1704.03379v1)

Published 11 Apr 2017 in cs.CV

Abstract: Automatic segmentation of medical images is an important task for many clinical applications. In practice, a wide range of anatomical structures are visualised using different imaging modalities. In this paper, we investigate whether a single convolutional neural network (CNN) can be trained to perform different segmentation tasks. A single CNN is trained to segment six tissues in MR brain images, the pectoral muscle in MR breast images, and the coronary arteries in cardiac CTA. The CNN therefore learns to identify the imaging modality, the visualised anatomical structures, and the tissue classes. For each of the three tasks (brain MRI, breast MRI and cardiac CTA), this combined training procedure resulted in a segmentation performance equivalent to that of a CNN trained specifically for that task, demonstrating the high capacity of CNN architectures. Hence, a single system could be used in clinical practice to automatically perform diverse segmentation tasks without task-specific training.

Citations (306)

Summary

  • The paper demonstrates a unified CNN architecture that segments diverse medical images with competitive Dice coefficients compared to single-task models.
  • The methodology employs a 25-layer deep network using triplanar input, batch normalization, and the Adam optimizer to process multiple modalities effectively.
  • The results suggest that multi-task learning can streamline clinical segmentation workflows while minimizing cross-modality misclassification.

Deep Learning for Multi-Task Medical Image Segmentation in Various Modalities

The paper "Deep Learning for Multi-Task Medical Image Segmentation in Multiple Modalities" explores the application of deep learning methodologies, specifically Convolutional Neural Networks (CNNs), for the automatic segmentation of medical images across six tissues in brain MRI, pectoral muscle in breast MRI, and coronary arteries in cardiac CTA. This research demonstrates the feasibility of employing a single CNN architecture to address disparate segmentation tasks across different imaging modalities, offering potential solutions to streamline the segmentation process in clinical practice.

Methodology

The authors employed a CNN framework characterized by its use of triplanar input patches and a deep 25-layer convolutional stack. This architecture efficiently processes three orthogonal planes (axial, sagittal, coronal) of the voxel space, relying on shared convolutional layers to minimize the risk of overfitting and optimize feature extraction. Further, by leveraging techniques such as batch normalization, exponential linear units for activation, and the Adam optimizer, the network's robustness and learning potential are enhanced significantly.

The CNN was tested under seven distinct training regimes, varying the combination of tasks it was exposed to. Notably, each regime included experiments where the network was trained exclusively for a single task, as well as instances where it tackled two or even all three tasks simultaneously. This setup allowed the researchers to evaluate the network's ability to generalize across different segmentation functions without sacrificing performance on any individual task.

Results

The evaluations, quantified primarily through Dice coefficients, indicate that the CNN maintains segmentation accuracy comparable to task-specific networks. Specifically, the learning curves for each task exhibited similar patterns across different training settings, suggesting robust generalizability and adaptability. The segmentation accuracy reported aligns with benchmarks from earlier studies in the literature, despite differences in datasets and patient demographics.

Moreover, confusion among different anatomical structures and modalities was minimal, reinforcing the utility of a multi-task CNN in practical applications. This aspect suggests that the risk of cross-modality misclassification is low, facilitating broader applicability in diverse clinical settings.

Implications and Directions for Future Research

This study presents a cogent case for the utility of multi-task CNN frameworks in medical image segmentation. From a practical perspective, such a system offers a consolidated approach to handling multiple imaging tasks, potentially decreasing the need for modality-specific training and reducing the overhead in clinical environments.

Theoretically, this work underscores the flexible capacity of CNN architectures to learn shared representations across disparate tasks, a finding that may inspire further exploration into transfer learning and domain adaptation in medical imaging.

Future research directions could include extending this architectural framework to additional tasks and modalities, thereby testing the scalability and upper capacity limits of such a network. Further investigation into the specific features and representations learnt by the CNN across tasks could also yield insights into the underlying mechanisms of multi-task learning in deep neural networks.

In conclusion, this paper contributes valuable insights into the deployment of deep learning techniques for automated segmentation across multiple medical imaging modalities. It lays the groundwork for future research efforts aimed at further enhancing CNN architectures' versatility and efficacy in medical image analysis.

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