On Self-Avoiding Walks across n-Dimensional Dice and Combinatorial Optimization: An Introduction (1309.7508v1)

Abstract: Self-avoiding walks (SAWs) were introduced in chemistry to model the real-life behavior of chain-like entities such as solvents and polymers, whose physical volume prohibits multiple occupation of the same spatial point. In mathematics, a SAW lives in the n-dimensional lattices. In this paper, SAWs are a metaphor for walks across faces of n-dimensional dice, or more formally, a hyperhedron family H(Theta, b, n). Each face is assigned a label {x:Theta(x)}; x represents a unique n-dimensional coordinate string, Theta(x) is the value of the function. The walk searches Theta(x) for optima by following five simple rules: (1) select a random coordinate and mark it as the initial pivot'; (2) probe all unmarked adjacent coordinates, then select and mark the coordinate with the 'best value' as the new pivot; (3) continue the walk until either the 'best value' <=target value' or the walk is being blocked by adjacent coordinates that are already pivots; (4) if the walk is blocked, restart the walk from a randomly selected `new initial pivot'; (5) if needed, manage the memory overflow with a streaming-like buffer of appropriate size. Hard instances from a number of problem domains, including the 2D protein folding problem, with up to (2^{25})*(3^{24}) coordinates, have been solved with SAWs in less than 1,000,000 steps -- while also exceeding the quality of best known solutions to date.