Bisimulation under constrained configuration maps
Determine whether restricting the configuration map in the paper's polynomial efficient simulation framework to be consistent with an underlying species-to-species mapping yields weak bisimulation between the simulated and simulating chemical reaction network systems, and ascertain whether additionally requiring that underlying map to be a total bijection yields strong bisimulation.
References
While this work is complete in proving equivalence between these models, there are still several interesting open problems to consider (some of which are shown in Figure \ref{fig:vg_hub}): We aim to explore constrained versions of our simulation definition that recover existing notions as special cases. Does restricting the configuration map to be consistent with an underlying species-species mapping immediately results in weak bisimulation? If that underlying map is a total bijective function, does that yield strong bisimulation?