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A Pilot Empirical Study on When and How to Use Knowledge Graphs as Retrieval Augmented Generation (2502.20854v3)

Published 28 Feb 2025 in cs.AI and cs.CL

Abstract: The integration of Knowledge Graphs (KGs) into the Retrieval Augmented Generation (RAG) framework has attracted significant interest, with early studies showing promise in mitigating hallucinations and improving model accuracy. However, a systematic understanding and comparative analysis of the rapidly emerging KG-RAG methods are still lacking. This paper seeks to lay the foundation for systematically answering the question of when and how to use KG-RAG by analyzing their performance in various application scenarios associated with different technical configurations. After outlining the mind map using KG-RAG framework and summarizing its popular pipeline, we conduct a pilot empirical study of KG-RAG works to reimplement and evaluate 6 KG-RAG methods across 9 datasets in diverse domains and scenarios, analyzing the impact of 9 KG-RAG configurations in combination with 17 LLMs, and combining Metacognition with KG-RAG as a pilot attempt. Our results underscore the critical role of appropriate application conditions and optimal configurations of KG-RAG components.

Summary

  • The paper demonstrates that KG-augmented RAG boosts performance for open-source LLMs in domain-specific, lower-difficulty tasks, achieving gains up to 65.09 F1 in medical QA.
  • The study shows that KG-RAG struggles in high-difficulty, multi-hop scenarios where model inference gaps and KG quality limitations restrict improvements.
  • The paper reveals that optimal KG-RAG configurations vary by task, emphasizing tailored query enhancements and retrieval strategies for effective application.

Empirical Evaluation of Knowledge Graph-Augmented Retrieval-Augmented Generation: Task Applicability and Configuration Insights

The paper systematically investigates the integration of Knowledge Graphs (KGs) into Retrieval-Augmented Generation (RAG) pipelines, framing the problem around two central questions: under what conditions does KG-augmented RAG (KG-RAG) benefit downstream tasks, and what technical configurations maximize its effectiveness. By reimplementing and benchmarking six KG-RAG methods across seven diverse datasets with seventeen LLMs, the paper provides a comprehensive, empirical analysis that advances understanding beyond qualitative survey and isolated case studies.

Empirical Design and Methodology

The authors construct a rigorous evaluation matrix encompassing:

  • Task Variety: The datasets span open-domain QA (CommonsenseQA), domain-specific QA (GenMedGPT-5K, CMCQA), and professional medical exams (CMB-Exam, ExplainCPE). The tasks are further stratified into single-hop (factoid) and multi-hop (complex) reasoning.
  • Model Coverage: Seventeen LLMs, including both open-source (e.g., Qwen1.5-7B, Llama2-7B, Qwen2-72B) and commercial (GPT4o, Claude3.5-Sonnet, Gemini1.5-Pro) models are evaluated.
  • KG Quality Analysis: Both generic and custom, LLM-curated knowledge graphs are incorporated as retrieval sources, with explicit examination of KG quality’s impact on downstream performance.
  • Modular KG-RAG Pipeline Variations: The contributions are dissected across three pipeline stages: pre-retrieval query enhancement (expansion, decomposition, understanding), retrieval form (facts, paths, subgraphs), and post-retrieval prompting (CoT, ToT, MindMap, none).

Principal Numerical Findings

KG-RAG boosts open-source LLMs in domain-specific and lower-difficulty tasks:

  • On medical QA and exam datasets (e.g., GenMedGPT-5K, CMB-Exam), open-source LLMs augmented with KG-RAG show marked gains—for example, Llama2-7B with KG-RAG methods achieves up to 65.09 F1 on GenMedGPT-5K, outperforming the same model with no retrieval.
  • For open-domain CommonsenseQA, commercial LLMs retain superiority; KG-RAG is less impactful, likely due to the strong priors already embedded within large commercial models.

KG-RAG cannot compensate for base-model inferential gaps in high-difficulty, multi-hop settings:

  • On challenging multi-hop datasets (CMCQA, ExplainCPE), improvements from KG-RAG are diminished or even negative, with the benefit contingent on both model capacity and graph quality.
  • Enhanced KG quality (specialized, LLM-extracted) significantly improves results, highlighting that coverage and correctness of the KG are prerequisites for successful augmentation.

KG-RAG narrows, but only sometimes closes, the gap with commercial LLMs:

  • In domain-specific, lower-difficulty scenarios, open-source LLMs with KG-RAG can match or exceed some commercial counterparts, offering cost and privacy advantages.
  • For complex tasks, commercial models with large parameter counts and broader training corpora still dominate, even with KG-RAG enhancements to open-source models.

No universally optimal pipeline configuration emerges:

  • Query expansion aids short, factoid QA; decomposition suits extended, multi-clause queries; query understanding is robust but offers modest improvement across the board.
  • Finer-grained retrieval (facts, paths) outperforms denser, potentially noisier subgraph retrieval for short-enough questions; for long, dialogue-driven QA, retrieval form matters less.
  • Contrary to prevailing intuition, prompt-based guided reasoning (CoT, ToT, MindMap) can be detrimental for domain-specific QA, with direct answer generation from retrieved knowledge more effective in empirical evaluations.

Implications and Future Directions

Practical Deployment

  • Open-source Model Viability: Enriching smaller, cheaper open-source models with high-quality domain KGs enables practical, affordable deployment in specialized domains such as medicine, scientific QA, or enterprise knowledge bases where data privacy is critical.
  • Configuration Selection: The results underscore the necessity of tailoring KG-RAG pipelines to the nature of the target task and question type. For instance, facts/paths retrieval with minimal post-retrieval prompting performs best for medical QA, while query decomposition is key for long conversational queries.
  • Graph Quality: The demonstrable sensitivity of performance to KG coverage and accuracy mandates dedicated efforts in curation and automated graph extraction, especially in high-stakes domains.

Theoretical Constraints and Research Gaps

  • Upper Bounds: There is an observed ceiling for the value KG-RAG brings—when base model inference or reasoning capacity is lacking, or when the task is highly compositional or adversarial, external knowledge alone is insufficient.
  • Prompting Limitations: Advanced prompting strategies like CoT and ToT, while hailed for transparency, may distract or confuse models in domains where precise retrieval alignment and minimalistic answering is preferable.

Future Prospects

  • Scaling with Model Capacity: Further studies should assess if next-generation open-source LLMs (>70B parameters) paired with KG-RAG pipelines can bridge or surpass commercial model performance across challenging tasks.
  • Automated, Continual KG Construction: Transitioning to fully iterative and LLM-driven knowledge graph extension is likely to be critical, especially as task domains evolve or become more dynamic.
  • Interaction with Other Retrieval Paradigms: Comparative studies involving unstructured/structured hybrid retrieval and fusion with neural vector databases may yield synergistic effects.

Conclusion

The paper contributes a robust empirical foundation for KG-RAG methodology in the LLM ecosystem. Its systematic quantitative analysis clarifies that while KG-RAG is not a panacea, it is a critical enabler for open, cost-efficient, and privacy-conscious LLM deployment in vertical domains—provided that both graph quality and pipeline configuration are matched to the intended application. Future work should address scaling challenges, the role of graph incompleteness, and uncover optimal integration strategies as LLMs and KGs continue to co-evolve.