Papers
Topics
Authors
Recent
Search
2000 character limit reached

Seg-metrics: a Python package to compute segmentation metrics

Published 12 Jan 2024 in cs.CV and cs.AI | (2403.07884v1)

Abstract: In response to a concerning trend of selectively emphasizing metrics in medical image segmentation (MIS) studies, we introduce \texttt{seg-metrics}, an open-source Python package for standardized MIS model evaluation. Unlike existing packages, \texttt{seg-metrics} offers user-friendly interfaces for various overlap-based and distance-based metrics, providing a comprehensive solution. \texttt{seg-metrics} supports multiple file formats and is easily installable through the Python Package Index (PyPI). With a focus on speed and convenience, \texttt{seg-metrics} stands as a valuable tool for efficient MIS model assessment.

Definition Search Book Streamline Icon: https://streamlinehq.com
References (7)
  1. Dominik Müller, Iñaki Soto-Rey and Frank Kramer “Towards a guideline for evaluation metrics in medical image segmentation” In BMC Research Notes 15.1 Springer, 2022, pp. 210
  2. “The design of SimpleITK” In Frontiers in neuroinformatics 7 Frontiers Media SA, 2013, pp. 45
  3. O. Maier “Medpy”, 2015
  4. “Metrics reloaded: Pitfalls and recommendations for image analysis validation” In arXiv. org University of Zurich, 2022
  5. guettli “”Safe” Project Names and underscores in Project Names issue”, https://mail.python.org/pipermail/distutils-sig/2011-August/017936.html, 2011
  6. ast “Dash/underscore on name of package uploaded on pypi”, https://groups.google.com/g/comp.lang.python/c/Y5zcSR7wn7c?pli=1, 2019
  7. guettli “pip -e: No magic underscore to dash replacement”, https://stackoverflow.com/questions/19097057/pip-e-no-magic-underscore-to-dash-replacement, 2013
Citations (4)

Summary

Paper to Video (Beta)

Whiteboard

No one has generated a whiteboard explanation for this paper yet.

Open Problems

We haven't generated a list of open problems mentioned in this paper yet.

Continue Learning

We haven't generated follow-up questions for this paper yet.

Collections

Sign up for free to add this paper to one or more collections.

Tweets

Sign up for free to view the 1 tweet with 0 likes about this paper.