Transforming Norm-based To Graph-based Spatial Representation for Spatio-Temporal Epidemiological Models (2402.14539v2)
Abstract: Pandemics, with their profound societal and economic impacts, pose significant threats to global health, mortality rates, economic stability, and political landscapes. In response to these challenges, numerous studies have employed spatio-temporal models to enhance our understanding and management of these complex phenomena. These spatio-temporal models can be roughly divided into two main spatial categories: norm-based and graph-based. Norm-based models are usually more accurate and easier to model but are more computationally intensive and require more data to fit. On the other hand, graph-based models are less accurate and harder to model but are less computationally intensive and require fewer data to fit. As such, ideally, one would like to use a graph-based model while preserving the representation accuracy obtained by the norm-based model. In this study, we explore the ability to transform from norm-based to graph-based spatial representation for these models. We first show no analytical mapping between the two exists, requiring one to use approximation numerical methods instead. We introduce a novel framework for this task together with twelve possible implementations using a wide range of heuristic optimization approaches. Our findings show that by leveraging agent-based simulations and heuristic algorithms for the graph node's location and population's spatial walk dynamics approximation one can use graph-based spatial representation without losing much of the model's accuracy and expressiveness. We investigate our framework for three real-world cases, achieving 94\% accuracy preservation, on average. Moreover, an analysis of synthetic cases shows the proposed framework is relatively robust for changes in both spatial and temporal properties.
- Andrea Alberto Conti. Historical and methodological highlights of quarantine measures: from ancient plague epidemics to current coronavirus disease (COVID-19) pandemic. Acta bio-medica : Atenei Parmensis, 91(2):226–229, 2020.
- A literature review of the economics of covid-19. IZA Discussion Paper No. 13411, Available at SSRN: https://ssrn.com/abstract=3636640, 2020.
- Eurosurveillance Editorial Team. Note from the editors: World health organization declares novel coronavirus (2019-ncov) sixth public health emergency of international concern. Euro Surveill, 25:200131e, 2020.
- Lessons from sars and h1n1/a: employing a who–wto forum to promote optimal economic-public health pandemic response. Journal of Public Health Policy, 33:119–139, 2012.
- L. Shami and T. Lazebnik. Financing and managing epidemiological-economic crises: Are we ready for another outbreak? Journal of Policy Modeling, 45(1):74–89, 2023.
- Middle east respiratory syndrome coronavirus (mers-cov): announcement of the coronavirus study group. Journal of Virology, 87:7790–7792, 2013.
- A D. Iuliano and et al. Estimates of global seasonal influenza-associated respiratory mortality: a modelling study. The Lancet, 391(10127):1285–1300, 2018.
- Optimal mitigation policies in a pandemic: Social distancing and working from home. The Review of Financial Studies, 34(11):5188–5223, 2021.
- Optimal targeted lockdowns in a multigroup sir model. American Economic Review: Insights, 3(4):487–502, 2021.
- Dynamics of zika virus outbreaks: an overview of mathematical modeling approaches. PeerJ, 2018.
- Mathematical models for covid‑19 pandemic: A comparative analysis. J. Indian Inst. Sci., 100(4):793–807, 2020.
- Real-time epidemic forecasting: challenges and opportunities. Health Security, 17(8):268–275, 2019.
- Mathematical modeling of the spread of the coronavirus disease 2019 (covid-19) taking into account the undetected infections. the case of china. Commun Nonlinear Sci Numer Simulat, 2020.
- The role of augmented intelligence (ai) in detecting and preventing the spread of novel coronavirus. Journal of Medical Systems, 44, 2020.
- Time series analysis and forecast of the covid-19 pandemic in india using genetic programming. Chaos Solitons Fractals, 138:109945, 2020.
- P. Agarwal and K. Jhajharia. Data analysis and modeling of covid-19. Journal of Statistics and Management Systems, 24(1):1, 2021.
- Mathematical modelling of covid-19 transmission and mitigation strategies in the population of ontario, canada. CMAJ, 192:E497–E505, 2020.
- J. C. Miller. Mathematical models of sir disease spread with combined non-sexual and sexual transmission routes. Infectious Disease Modelling, 2:35–55, 2017.
- A simple mathematical model for ebola in africa. Journal of Biological Dynamics, 11(1):42–74, 2017.
- Joel C Miller. Mathematical models of SIR disease spread with combined non-sexual and sexual transmission routes. Infectious Disease Modelling, 2(1):35–55, 2017.
- M. Al-Raeei. The forecasting of covid-19 with mortality using SIRD epidemic model for the united states, russia, china, and the syrian arab republic. AUO Advances, 10(6), 2020.
- J. Fernández-Villaverde and C. I. Jones. Estimating and simulating a SIRD model of COVID-19 for many countries, states, and cities. Working Paper 27128, National Bureau of Economic Research, 2020.
- G. Ellison. Implications of heterogeneous SIR models for analyses of COVID-19. National Bureau of Economic Research, page Working paper 27373, 2020.
- A contribution to the mathematical theory of epidemics. Proceedings of the Royal Society, 115:700–721, 1927.
- A limited memory algorithm for bound constrained optimization. SIAM Journal on scientific computing, 16(5):1190–1208, 1995.
- Predictive performance of international covid-19 mortality forecasting models. Nature Communications, 12:2609, 2021.
- Spatio-temporal influence of non-pharmaceutical interventions policies on pandemic dynamics and the economy: The case of covid-19. Research Economics, 2021.
- R. Baber. Pandemics: learning from the past. Climacteric, 23(3):211–212, 2020.
- Dynamic epidemiological models for dengue transmission: A systematic review of structural approaches. Plos One, 7(11):1–14, 11 2012.
- A. A. Conti. Historical and methodological highlights of quarantine measures: from ancient plague epidemics to current coronavirus disease (COVID-19) pandemic. Acta bio-medica : Atenei Parmensis, 91(2):226–229, 2020.
- Practical indicators for risk of airborne transmission in shared indoor environments and their application to covid-19 outbreaks. Environmental Science and Technology, 56:1125–1137, 2020.
- T. Lazebnik and A. Alexi. Comparison of pandemic intervention policies in several building types using heterogeneous population model. Communications in Nonlinear Science and Numerical Simulation, 107(4):106176, 2022.
- T. Fukuoka and K. Ito. Exposure risk assessment by coupled analysis of cfd and sir model in enclosed space. AIVC, 2010.
- Simulation and visualization of energy-related occupant behavior in office buildings. Building Simulation, 10:785–798, 2017.
- N. Masuda and P. Holme. Temporal network epidemiology. Springer: Singapore, 2017.
- P. Holme. Fast and principled simulations of the sir model on temporal networks. Plos One, 16(2):e0246961, 2021.
- Mathematics of epidemics on networks. Cham: Springer, 2017.
- A security games inspired approach for distributed control of pandemic spread. Advanced Theory and Simulations, 6(2):2200631, 2023.
- Simulating the spread of covid-19 via a spatially-resolved susceptible–exposed–infected–recovered–deceased (seird) model with heterogeneous diffusion. Applied Mathematics Letters, 111:106617, 2021.
- Economics and epidemics: Evidence from an estimated spatial econ-sir model. Finance and Economics Discussion Series 2020-091. Washington: Board of Governors of the Federal Reserve System, 2020.
- Comparison of an agent-based model of disease propagation with the generalised sir epidemic model. page ADA510899, 2009.
- On agent-based approach to influenza and acute respiratory virus infection simulation. In 2018 14th International Conference on Advanced Trends in Radioelecrtronics, Telecommunications and Computer Engineering (TCSET), pages 192–195, 2018.
- Csonnet: An agent-based modeling software system for discrete time simulation. In 2021 Winter Simulation Conference (WSC), pages 1–12, 2021.
- V. S. Alagar and K. Periyasamy. Extended Finite State Machine, pages 105–128. Springer London, 2011.
- T. Lazebnik and A. Alexi. High resolution spatio-temporal model for room-level airborne pandemic spread. Mathematics, 11(2):426, 2023.
- T. Lazebnik. Computational applications of extended sir models: A review focused on airborne pandemics. Ecological Modelling, 483:110422, 2023.
- T. Lazebnik. Cost-optimal seeding strategy during a botanical pandemic in domesticated fields. arXiv, 2023.
- Identification of 3d objects from multiple silhouettes using quadtrees/octrees. Computer Vision, Graphics, and Image Processing, 36(2):256–273, 1986.
- H. Samet. The quadtree and related hierarchical data structures. ACM Computing Surveys, 16(2):187–260, 1984.
- Towards in situ visualization of extreme-scale, agent-based, worldwide disease-spreading simulations. SIGGRAPH Asia 2015 Visualization in High Performance Computing, 7:1–4, 2015.
- L. Bo and L. Rein. Comparison of the luus–jaakola optimization procedure and the genetic algorithm. Engineering Optimization, 37(4):381–396, 2005.
- The applications of genetic algorithms in medicine. Oman Med J., 30(6):406–416, 2005.
- L. Davis. Applying adaptive algorithms to epistatic domains. Proceedings of the international joint conference on artificial intelligence, pages 162–164, 1985.
- Optimization of process route by genetic algorithms. Robotics and Computer-Integrated Manufacturing, 22:180–188, 2006.
- A. B. A. Hassanat and E. Alkafaween. On enhancing genetic algorithms using new crossovers. International Journal of Computer Applications in Technology, 55(3), 2017.
- Modeling genetic algorithms with Markov chains. Annals of Mathematics and Artificial Intelligence, 5(1), 1992.
- Microfounded tax revenue forecast model with heterogeneous population and genetic algorithm approach. Computational Economics, 2023.
- T. Grossman and A. Wool. Computational experience with approximation algorithms for the set covering problem. European Journal of Operational Research, 101(1):81–92, 1997.
- J. H. Holland. Genetic algorithms. Scientific American, 267(1):66–73, 1992.
- Efficient time series clustering by minimizing dynamic time warping utilization. IEEE Access, 9:46589–46599, 2021.
- Integration k-means clustering method and elbow method for identification of the best customer profile cluster. IOP Conference Series: Materials Science and Engineering, 336(1):012017, apr 2018.
- Generalized k-means-based clustering for temporal data under weighted and kernel time warp. Pattern Recognition Letters, 75:63–69, 2016.
- J. Zhang and K. F. Man. Time series prediction using rnn in multi-dimension embedding phase space. In SMC’98 Conference Proceedings. 1998 IEEE International Conference on Systems, Man, and Cybernetics (Cat. No.98CH36218), volume 2, pages 1868–1873, 1998.
- D. P. Kingma and J. Ba. Adam: A method for stochastic optimization. arXiv, 2017.
- N. Privault. Understanding Markov Chains. Springer Singapore, 2018.
- S. Sharma. Markov chain monte carlo methods for bayesian data analysis in astronomy. Annual Review of Astronomy and Astrophysics, 55(1):213–259, 2017.
- Autoencoders, pages 353–374. Springer International Publishing, Cham, 2023.
- T. Lazebnik and L/ Simon-Keren. Cancer-inspired genomics mapper model for the generation of synthetic dna sequences with desired genomics signatures. Computers in Biology and Medicine, 164:107221, 2023.
- Tpot: A tree-based pipeline optimization tool for automating machine learning. In Workshop on Automatic Machine Learning, pages 66–74. PMLR, 2016.
- Benchmarking biologically-inspired automatic machine learning for economic tasks. Sustainability, 15(14), 2023.
- T. Lazebnik. Data-driven hospitals staff and resources allocation using agent-based simulation and deep reinforcement learning. Engineering Applications of Artificial Intelligence, 126:106783, 2023.
- Measuring and characterizing generalization in deep reinforcement learning. Applied AI Letters, 2(4):e45, 2021.
- Learning to dispatch for job shop scheduling via deep reinforcement learning. In 34th Conference on Neural Information Processing Systems, 2020.
- Syntheye: Investigating the impact of synthetic data on artificial intelligence-assisted gene diagnosis of inherited retinal disease. Ophthalmology Science, 3:100258, 2023.
- Deep reinforcement learning: A brief survey. IEEE Signal Processing Magazine, 34(6):26–38, 2017.
- Proximal policy optimization algorithm. arXiv, 2017.
- Pandemic management by a spatio–temporal mathematical model. International Journal of Nonlinear Sciences and Numerical Simulation, 107(4):106176, 2021.
- T. Lazebnik and S. Bunimovich-Mendrazitsky. Generic approach for mathematical model of multi-strain pandemics. Plos One, 17(4):e0260683, 2022.
- L. Yang and A. Shami. On hyperparameter optimization of machine learning algorithms: Theory and practice. Neurocomputing, 415:295–316, 2020.
- Agent-based simulation for infectious disease modelling over a period of multiple days, with application to an airport scenario. International Journal of Environmental Research and Public Health, 20(1), 2023.
- Evidence of long-distance droplet transmission of sars-cov-2 by direct air flow in a restaurant in korea. J Korean Med Sci, 35(46):e415, 2020.
- Community outbreak investigation of sars-cov-2 transmission among bus riders in eastern china. JAMA Internal Medicine, 180(12):1665–1671, 2020.
- L. Shami and T. Lazebnik. Economic aspects of the detection of new strains in a multi-strain epidemiological–mathematical model. Chaos, Solitons & Fractals, 165:112823, 2022.
- Data assimilation predictive gan (da-predgan) applied to a spatio-temporal compartmental model in epidemiology. Journal of Scientific Computing, 94(25), 2023.
- Epidemiological characteristics and spatio-temporal analysis of brucellosis in shandong province, 2015–2021. BMC Infectious Diseases, 23(669), 2023.
- Big problems in spatio-temporal disease mapping: Methods and software. Cpmputer Methods and PRograms in Biomedicine, 231(107403), 2023.
- Optimal control by deep learning techniques and its applications on epidemic models. Journal of Mathematical Biology, 86(36), 2023.
- I McDowell. Explanation and Causal Models for Social Epidemiology, pages 37–88. Springer International Publishing, 2023.
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