Papers
Topics
Authors
Recent
Assistant
AI Research Assistant
Well-researched responses based on relevant abstracts and paper content.
Custom Instructions Pro
Preferences or requirements that you'd like Emergent Mind to consider when generating responses.
Gemini 2.5 Flash
Gemini 2.5 Flash 147 tok/s
Gemini 2.5 Pro 50 tok/s Pro
GPT-5 Medium 25 tok/s Pro
GPT-5 High 20 tok/s Pro
GPT-4o 90 tok/s Pro
Kimi K2 192 tok/s Pro
GPT OSS 120B 424 tok/s Pro
Claude Sonnet 4.5 39 tok/s Pro
2000 character limit reached

SADIR: Shape-Aware Diffusion Models for 3D Image Reconstruction (2309.03335v2)

Published 6 Sep 2023 in cs.CV and eess.IV

Abstract: 3D image reconstruction from a limited number of 2D images has been a long-standing challenge in computer vision and image analysis. While deep learning-based approaches have achieved impressive performance in this area, existing deep networks often fail to effectively utilize the shape structures of objects presented in images. As a result, the topology of reconstructed objects may not be well preserved, leading to the presence of artifacts such as discontinuities, holes, or mismatched connections between different parts. In this paper, we propose a shape-aware network based on diffusion models for 3D image reconstruction, named SADIR, to address these issues. In contrast to previous methods that primarily rely on spatial correlations of image intensities for 3D reconstruction, our model leverages shape priors learned from the training data to guide the reconstruction process. To achieve this, we develop a joint learning network that simultaneously learns a mean shape under deformation models. Each reconstructed image is then considered as a deformed variant of the mean shape. We validate our model, SADIR, on both brain and cardiac magnetic resonance images (MRIs). Experimental results show that our method outperforms the baselines with lower reconstruction error and better preservation of the shape structure of objects within the images.

Definition Search Book Streamline Icon: https://streamlinehq.com
References (47)
  1. V. Arnold. Sur la géométrie différentielle des groupes de lie de dimension infinie et ses applications à l’hydrodynamique des fluides parfaits. In Annales de l’institut Fourier, volume 16, pages 319–361, 1966.
  2. Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Medical image analysis, 12(1):26–41, 2008.
  3. Computing large deformation metric mappings via geodesic flows of diffeomorphisms. International journal of computer vision, 61(2):139–157, 2005.
  4. Detecting clinically meaningful shape clusters in medical image data: metrics analysis for hierarchical clustering applied to healthy and pathological aortic arches. IEEE Transactions on Biomedical Engineering, 64(10):2373–2383, 2017.
  5. Attri-vae: Attribute-based interpretable representations of medical images with variational autoencoders. Computerized Medical Imaging and Graphics, 104:102158, 2023.
  6. Learning shape priors for robust cardiac mr segmentation from multi-view images. In Medical Image Computing and Computer Assisted Intervention–MICCAI 2019: 22nd International Conference, Shenzhen, China, October 13–17, 2019, Proceedings, Part II 22, pages 523–531. Springer, 2019.
  7. Self-supervised learning for medical image analysis using image context restoration. Medical image analysis, 58:101539, 2019.
  8. Solving 3d inverse problems using pre-trained 2d diffusion models. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pages 22542–22551, 2023.
  9. 3d u-net: learning dense volumetric segmentation from sparse annotation. In Medical Image Computing and Computer-Assisted Intervention–MICCAI 2016: 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part II 19, pages 424–432. Springer, 2016.
  10. L. R. Dice. Measures of the amount of ecologic association between species. Ecology, 26(3):297–302, 1945.
  11. An image is worth 16x16 words: Transformers for image recognition at scale. arXiv preprint arXiv:2010.11929, 2020.
  12. 3d object tracking with neuromorphic event cameras via image reconstruction. In 2021 IEEE Biomedical Circuits and Systems Conference (BioCAS), pages 1–4. IEEE, 2021.
  13. 3d slicer as an image computing platform for the quantitative imaging network, Nov 2012.
  14. Task transformer network for joint mri reconstruction and super-resolution. In Medical Image Computing and Computer Assisted Intervention–MICCAI 2021: 24th International Conference, Strasbourg, France, September 27–October 1, 2021, Proceedings, Part VI 24, pages 307–317. Springer, 2021.
  15. Generative adversarial networks. Communications of the ACM, 63(11):139–144, 2020.
  16. Denoising diffusion probabilistic models. Advances in Neural Information Processing Systems, 33:6840–6851, 2020.
  17. Squeeze-and-excitation networks, 2019.
  18. Comparing images using the hausdorff distance. IEEE Transactions on Pattern Analysis and Machine Intelligence, 15(9):850–863, 1993.
  19. P. Jaccard. Nouvelles recherches sur la distribution florale. Bull. Soc. Vaud. Sci. Nat., 44:223–270, 1908.
  20. J. Jiang and H. Veeraraghavan. One shot pacs: Patient specific anatomic context and shape prior aware recurrent registration-segmentation of longitudinal thoracic cone beam cts. IEEE Transactions on Medical Imaging, 41(8):2021–2032, 2022.
  21. Unbiased diffeomorphic atlas construction for computational anatomy. NeuroImage, 23:S151–S160, 2004.
  22. Unsupervised mri reconstruction via zero-shot learned adversarial transformers. IEEE Transactions on Medical Imaging, 41(7):1747–1763, 2022.
  23. Oasis-3: longitudinal neuroimaging, clinical, and cognitive dataset for normal aging and alzheimer disease. MedRxiv, 2019.
  24. J. Li. Medshapenet: A large-scale dataset of 3d medical shapes for computer vision, Mar 2023.
  25. Artificial intelligence for mr image reconstruction: an overview for clinicians. Journal of Magnetic Resonance Imaging, 53(4):1015–1028, 2021.
  26. Rethinking medical image reconstruction via shape prior, going deeper and faster: Deep joint indirect registration and reconstruction. Medical Image Analysis, 68:101930, 2021.
  27. Biva: A very deep hierarchy of latent variables for generative modeling. Advances in neural information processing systems, 32, 2019.
  28. Optical techniques for 3d surface reconstruction in computer-assisted laparoscopic surgery. Medical image analysis, 17(8):974–996, 2013.
  29. Geodesic shooting for computational anatomy. Journal of mathematical imaging and vision, 24(2):209–228, 2006.
  30. 3d-ucaps: 3d capsules unet for volumetric image segmentation. In Medical Image Computing and Computer Assisted Intervention–MICCAI 2021: 24th International Conference, Strasbourg, France, September 27–October 1, 2021, Proceedings, Part I 24, pages 548–558. Springer, 2021.
  31. J. Nocedal and S. J. Wright. Numerical optimization. Springer, 1999.
  32. Convolutional recurrent neural networks for dynamic mr image reconstruction. IEEE transactions on medical imaging, 38(1):280–290, 2018.
  33. U-net: Convolutional networks for biomedical image segmentation. In Medical Image Computing and Computer-Assisted Intervention–MICCAI 2015: 18th International Conference, Munich, Germany, October 5-9, 2015, Proceedings, Part III 18, pages 234–241. Springer, 2015.
  34. A deep cascade of convolutional neural networks for dynamic mr image reconstruction. IEEE transactions on Medical Imaging, 37(2):491–503, 2017.
  35. Diffeomorphic 3d image registration via geodesic shooting using an efficient adjoint calculation. International Journal of Computer Vision, 97(2):229–241, 2012.
  36. An efficient riemannian statistical shape model using differential coordinates: With application to the classification of data from the osteoarthritis initiative. Medical image analysis, 43:1–9, 2018.
  37. A diffusion model predicts 3d shapes from 2d microscopy images, 2023.
  38. J. Wang and M. Zhang. Bayesian atlas building with hierarchical priors for subject-specific regularization. In International Conference on Medical Image Computing and Computer-Assisted Intervention, pages 76–86. Springer, 2021.
  39. J. Wang and M. Zhang. Geo-sic: learning deformable geometric shapes in deep image classifiers. Advances in Neural Information Processing Systems, 35:27994–28007, 2022.
  40. Multi-modal volume registration by maximization of mutual information. Medical image analysis, 1(1):35–51, 1996.
  41. Diffusion models for medical anomaly detection. In Medical Image Computing and Computer Assisted Intervention–MICCAI 2022: 25th International Conference, Singapore, September 18–22, 2022, Proceedings, Part VIII, pages 35–45. Springer, 2022.
  42. Hybrid atlas building with deep registration priors. In 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), pages 1–5. IEEE, 2022.
  43. Implicitatlas: learning deformable shape templates in medical imaging. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pages 15861–15871, 2022.
  44. Robot navigation using modified slam procedure based on depth image reconstruction. In Artificial Intelligence and Machine Learning in Defense Applications III, volume 11870, pages 73–82. SPIE, 2021.
  45. Bayesian estimation of regularization and atlas building in diffeomorphic image registration. In International conference on information processing in medical imaging, pages 37–48. Springer, 2013.
  46. Low-dimensional statistics of anatomical variability via compact representation of image deformations. In Medical Image Computing and Computer-Assisted Intervention-MICCAI 2016: 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part III 19, pages 166–173. Springer, 2016.
  47. Unet++: A nested u-net architecture for medical image segmentation. In Deep learning in medical image analysis and multimodal learning for clinical decision support, pages 3–11. Springer, 2018.
Citations (6)

Summary

We haven't generated a summary for this paper yet.

Dice Question Streamline Icon: https://streamlinehq.com

Open Problems

We haven't generated a list of open problems mentioned in this paper yet.

Lightbulb Streamline Icon: https://streamlinehq.com

Continue Learning

We haven't generated follow-up questions for this paper yet.

List To Do Tasks Checklist Streamline Icon: https://streamlinehq.com

Collections

Sign up for free to add this paper to one or more collections.