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Hierarchical Uncertainty-Aware Graph Neural Network (2504.19820v2)

Published 28 Apr 2025 in cs.LG and cs.IR

Abstract: Recent research on graph neural networks (GNNs) has explored mechanisms for capturing local uncertainty and exploiting graph hierarchies to mitigate data sparsity and leverage structural properties. However, the synergistic integration of these two approaches remains underexplored. This work introduces a novel architecture, the Hierarchical Uncertainty-Aware Graph Neural Network (HU-GNN), which unifies multi-scale representation learning, principled uncertainty estimation, and self-supervised embedding diversity within a single end-to-end framework. Specifically, HU-GNN adaptively forms node clusters and estimates uncertainty at multiple structural scales from individual nodes to higher levels. These uncertainty estimates guide a robust message-passing mechanism and attention weighting, effectively mitigating noise and adversarial perturbations while preserving predictive accuracy on semi-supervised classification tasks. We also offer key theoretical contributions, including a probabilistic formulation, rigorous uncertainty-calibration guarantees, and formal robustness bounds. Extensive experiments on standard benchmarks demonstrate that our model achieves state-of-the-art robustness and interpretability.

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Summary

Hierarchical Uncertainty-Aware Graph Neural Network

The presented paper introduces an innovative architecture in graph neural networks (GNNs) known as the Hierarchical Uncertainty-Aware Graph Neural Network (HU-GNN). This architecture aims to address the challenges of capturing uncertainty and leveraging graph hierarchies simultaneously, thereby enhancing the robustness and interpretability of GNNs used in semi-supervised node classification tasks. Graph data are prevalent in many domains, including citation networks, social networks, and biological networks, where they can exhibit either homophilic or heterophilic structures. Standard GNNs often struggle with heterophilic graphs, as they primarily rely on feature aggregation from local neighborhoods, which may lead to over-smoothing in cases of low class homophily.

Architectural Overview

HU-GNN integrates three fundamental components: multi-scale representation learning, uncertainty estimation, and self-supervised embedding diversity within an end-to-end framework. This approach differentiates itself by employing node clustering mechanisms that adaptively estimate uncertainty at multiple structural scales, ranging from individual nodes to higher-level clusters. This enables a robust message-passing mechanism that effectively mitigates noise and adversarial perturbations while preserving predictive accuracy across both node- and graph-level tasks.

Theoretical Contributions

The authors provide significant theoretical contributions, including a probabilistic model formulation, uncertainty-calibration guarantees, and robustness bounds. Through these formulations, HU-GNN offers a probabilistic interpretation of its uncertainty estimates, ensuring that they are well-calibrated and provide a measured level of confidence in the model predictions. The robustness bounds highlight the model's resilience against various types of perturbations, making HU-GNN particularly valuable for applications involving noisy or adversarial data settings.

Evaluation and Results

Extensive experiments demonstrate that HU-GNN achieves state-of-the-art performance on standard benchmarks. The robustness of the model is validated against leading baselines, with results showing substantial performance gains due to its hierarchical uncertainty-aware design. The proposed architecture not only proves to be accurate in homophilic settings but also maintains its predictive capability in heterophilic scenarios, where conventional GNNs often falter due to noisy neighborhood structures.

Practical and Theoretical Implications

Practically, HU-GNN presents an approach to reduce the effective node degree by weighing neighbors based on model-inferred uncertainty, providing a mechanism to ignore unreliable signals. Theoretically, its PAC-Bayesian generalization bounds suggest that HU-GNN effectively limits overfitting by adapting to graph complexities, including node degrees. Furthermore, the convergence of feature and uncertainty updates positions HU-GNN as a stable and reliable architecture for graph-based learning tasks.

Future Directions

As advancements in graph contrastive learning continue to emerge, HU-GNN could integrate more powerful embedding diversity mechanisms to further enhance its robustness. Future research could also explore the extension of hierarchical uncertainty techniques to broader applications within machine learning, beyond node classification, such as link prediction and graph generation tasks.

In conclusion, HU-GNN stands out as a strong contender in the graph neural network domain by employing a sophisticated architecture that synergizes hierarchy and uncertainty, thus enabling improved performance and interpretability in graph structured data. Its rigorous theoretical backing and impressive empirical results mark a significant step forward for robust and reliable GNN designs.

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