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Validating Bayesian Inference Algorithms with Simulation-Based Calibration (1804.06788v2)

Published 18 Apr 2018 in stat.ME

Abstract: Verifying the correctness of Bayesian computation is challenging. This is especially true for complex models that are common in practice, as these require sophisticated model implementations and algorithms. In this paper we introduce \emph{simulation-based calibration} (SBC), a general procedure for validating inferences from Bayesian algorithms capable of generating posterior samples. This procedure not only identifies inaccurate computation and inconsistencies in model implementations but also provides graphical summaries that can indicate the nature of the problems that arise. We argue that SBC is a critical part of a robust Bayesian workflow, as well as being a useful tool for those developing computational algorithms and statistical software.

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Summary

  • The paper introduces Simulation-Based Calibration to detect discrepancies in Bayesian inference algorithms using rank uniformity tests.
  • It outlines a procedure that leverages simulated datasets and posterior sampling to diagnose computational biases and model misspecifications.
  • Empirical case studies, including hierarchical models, demonstrate SBC’s potential to improve inference robustness and accuracy.

Simulation-Based Calibration for Validating Bayesian Inference Algorithms

The paper "Validating Bayesian Inference Algorithms with Simulation-Based Calibration" offers a robust methodology for ensuring the reliability of Bayesian computational algorithms through the innovative use of Simulation-Based Calibration (SBC). Given the intricate nature of Bayesian models, which often necessitate advanced computational techniques, maintaining the integrity and accuracy of these models is of paramount importance. This document presents a detailed examination of SBC as a method to validate Bayesian inference algorithms that can generate posterior samples, identifying discrepancies in computation or model specification and providing actionable insights into potential sources of inaccuracies.

Algorithmic Context and Challenges

Bayesian inference is primarily concerned with determining the posterior distribution, which involves a prior distribution combined with data likelihood. The complexity of modern Bayesian models often demands tailor-made algorithmic solutions, raising the risk of computational inaccuracies. Given that conventional diagnostics may fail to detect subtle but significant biases, SBC emerges as a vital tool within the Bayesian inferential workflow to ensure computational checks.

Simulation-Based Calibration Explained

SBC leverages the self-consistency of Bayesian joint distributions, where samples from the prior should align with averages over posteriors obtained from simulated data. Specifically, for any one-dimensional function of parameters, the rank of a sample from the prior relative to its posterior should exhibit a uniform distribution. Deviations from this uniformity reveal inconsistencies in the sampling or computation, providing diagnostic guidance on specific errors such as biases or inadequate posterior dispersion.

The SBC procedure involves:

  • Generating simulated datasets from the joint distribution.
  • Sampling from the posterior for each simulation.
  • Computing rank statistics to evaluate the positioning of prior samples within posterior samples.

This diagnostic approach not only identifies failures in Bayesian inference but also elucidates whether the issues stem from model misspecification or algorithm inefficacies.

Practical and Theoretical Implications

Empirically, SBC holds significant potential in enhancing the robustness of Bayesian analyses across varying model complexities. It can resolve issues inherent in standard Markov Chain Monte Carlo (MCMC) approaches, where autocorrelation can obfuscate inference fidelity. The paper illustrates SBC's applicability with case studies involving hierarchical models notorious for computational pitfalls when approached via traditional MCMC methods.

On the theoretical plane, SBC bolsters the confirmatory process of Bayesian model evaluation, indicating whether computed posteriors genuinely reflect the priors used to generate data. It provides a bridge to further refinements by identifying specific types of biases or errors in computation without requiring knowledge of 'true' posterior expectations.

Future Directions

While the paper establishes SBC's utility in validating complex Bayesian computations, future work could focus on developing automated diagnostics to quantify deviations objectively, thus complementing the visual assessments. Moreover, extending SBC to assess multivariate quantities can significantly enhance its diagnostic capability, particularly in models where interdependencies among parameters are central to inference.

In conclusion, Simulation-Based Calibration offers a critical advancement in the verification of Bayesian inference algorithms, ensuring accuracy and reliability in an era where computational models continue to expand in complexity and application. This methodology represents an essential integration into the Bayesian workflow, promising improved inferential quality and robustness.

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