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Erwin: A Tree-based Hierarchical Transformer for Large-scale Physical Systems (2502.17019v2)

Published 24 Feb 2025 in cs.LG, cs.AI, and cs.CV

Abstract: Large-scale physical systems defined on irregular grids pose significant scalability challenges for deep learning methods, especially in the presence of long-range interactions and multi-scale coupling. Traditional approaches that compute all pairwise interactions, such as attention, become computationally prohibitive as they scale quadratically with the number of nodes. We present Erwin, a hierarchical transformer inspired by methods from computational many-body physics, which combines the efficiency of tree-based algorithms with the expressivity of attention mechanisms. Erwin employs ball tree partitioning to organize computation, which enables linear-time attention by processing nodes in parallel within local neighborhoods of fixed size. Through progressive coarsening and refinement of the ball tree structure, complemented by a novel cross-ball interaction mechanism, it captures both fine-grained local details and global features. We demonstrate Erwin's effectiveness across multiple domains, including cosmology, molecular dynamics, PDE solving, and particle fluid dynamics, where it consistently outperforms baseline methods both in accuracy and computational efficiency.

Summary

Erwin: A Tree-based Hierarchical Transformer for Large-scale Physical Systems

The paper introduces "Erwin," a novel hierarchical transformer designed to address the scalability challenges inherent in large-scale physical systems represented on irregular grids. Designed with inspiration from computational many-body physics, Erwin integrates tree-based algorithms with attention mechanisms, offering an efficient approach to capture complex interactions in extensive particle systems.

Overview

Deep learning applications in domains such as cosmology, molecular dynamics, and fluid dynamics are often challenged by the need to process data on irregular grids with numerous nodes. Traditional attention mechanisms compute pairwise interactions between all elements, leading to quadratic scaling with increasing input size, which becomes computationally prohibitive. Erwin tackles these challenges by employing ball tree partitioning to manage computations across various scales. This enables a linear-time attention mechanism by processing nodes in parallel within local neighborhoods.

Key Contributions

  1. Ball Tree Partitioning: Erwin introduces an innovative method using ball tree structures to organize computation efficiently. This facilitates linear-time self-attention by localizing computation within fixed-size neighborhoods at different hierarchical levels.
  2. Hierarchical Transformer Architecture: The model utilizes a progressive coarsening and refinement strategy within the ball tree framework to capture both local detail and global features across scales. This allows Erwin to efficiently model systems that exhibit long-range interactions and multi-scale coupling, which are typical in physical domains.
  3. Performance Evaluation: The paper demonstrates Erwin's effectiveness across multiple large-scale physical domains, where it consistently outperforms baseline methods regarding both prediction accuracy and computational efficiency.

Numerical Results

Erwin's efficacy is showcased through experiments across cosmology, molecular dynamics, and turbulent fluid dynamics. In cosmology, the model scales effectively with training set size, outperforming both equivariant and non-equivariant models in larger data regimes. In molecular dynamics simulations, Erwin achieves substantial runtime improvements while maintaining prediction accuracy comparable to baselines. For turbulent fluid dynamics, Erwin offers superior expressivity and outperforms existing methods in terms of accuracy and efficiency, notably in predicting pressure and velocity fields.

Implications

The introduction of Erwin has significant practical and theoretical implications:

  • Practical Implications: Erwin's computational efficiency makes it suitable for deployment in high-throughput scenarios like protein design and molecular simulation, where rapid calculation and prediction are crucial.
  • Theoretical Implications: The paper advances the integration of physics-inspired methods into deep learning architectures, potentially influencing future developments in AI models designed to handle extensive and complex datasets efficiently.

Speculation on Future Developments

Future work may explore alternative tree configurations or learnable pooling techniques to further optimize computational overheads related to padding non-coarsened trees. Moreover, enhancing Erwin with equivariance properties could expand its applicability while maintaining scaling efficiency. Lastly, investigating the model's performance as a scalable neural operator for tasks beyond the scope of physical systems presents an exciting opportunity for broadening Erwin's applicability in AI.

In conclusion, the Erwin transformer represents a significant step in addressing computational challenges posed by large-scale physical systems, offering an efficient, scalable solution that marries the intricacies of attention mechanisms with hierarchical tree-based computations.