Papers
Topics
Authors
Recent
Gemini 2.5 Flash
Gemini 2.5 Flash 93 tok/s
Gemini 2.5 Pro 30 tok/s Pro
GPT-5 Medium 25 tok/s
GPT-5 High 30 tok/s Pro
GPT-4o 97 tok/s
GPT OSS 120B 479 tok/s Pro
Kimi K2 242 tok/s Pro
2000 character limit reached

YNetr: Dual-Encoder architecture on Plain Scan Liver Tumors (PSLT) (2404.00327v2)

Published 30 Mar 2024 in eess.IV, cs.CV, and cs.LG

Abstract: Background: Liver tumors are abnormal growths in the liver that can be either benign or malignant, with liver cancer being a significant health concern worldwide. However, there is no dataset for plain scan segmentation of liver tumors, nor any related algorithms. To fill this gap, we propose Plain Scan Liver Tumors(PSLT) and YNetr. Methods: A collection of 40 liver tumor plain scan segmentation datasets was assembled and annotated. Concurrently, we utilized Dice coefficient as the metric for assessing the segmentation outcomes produced by YNetr, having advantage of capturing different frequency information. Results: The YNetr model achieved a Dice coefficient of 62.63% on the PSLT dataset, surpassing the other publicly available model by an accuracy margin of 1.22%. Comparative evaluations were conducted against a range of models including UNet 3+, XNet, UNetr, Swin UNetr, Trans-BTS, COTr, nnUNetv2 (2D), nnUNetv2 (3D fullres), MedNext (2D) and MedNext(3D fullres). Conclusions: We not only proposed a dataset named PSLT(Plain Scan Liver Tumors), but also explored a structure called YNetr that utilizes wavelet transform to extract different frequency information, which having the SOTA in PSLT by experiments.

Definition Search Book Streamline Icon: https://streamlinehq.com
References (37)
  1. The liver tumor segmentation benchmark (lits). Medical Image Analysis 2023;84:102680.
  2. nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation. Nature methods 2021;18(2):203–211.
  3. XNet: Wavelet-Based Low and High Frequency Fusion Networks for Fully-and Semi-Supervised Semantic Segmentation of Biomedical Images. In: Proceedings of the IEEE/CVF International Conference on Computer Vision; 2023. p. 21085–21096.
  4. An image is worth 16x16 words: Transformers for image recognition at scale. arXiv preprint arXiv:201011929 2020;.
  5. Unetr: Transformers for 3d medical image segmentation. In: Proceedings of the IEEE/CVF winter conference on applications of computer vision; 2022. p. 574–584.
  6. Radiology data from the cancer genome atlas liver hepatocellular carcinoma [TCGA-LIHC] collection. Cancer Imaging Arch 2016;10:K9.
  7. Comparison and evaluation of methods for liver segmentation from CT datasets. IEEE transactions on medical imaging 2009;28(8):1251–1265.
  8. Cloud-based evaluation of anatomical structure segmentation and landmark detection algorithms: VISCERAL anatomy benchmarks. IEEE transactions on medical imaging 2016;35(11):2459–2475.
  9. CHAOS challenge-combined (CT-MR) healthy abdominal organ segmentation. Medical Image Analysis 2021;69:101950.
  10. 3D Slicer as an image computing platform for the Quantitative Imaging Network. Magnetic resonance imaging 2012;30(9):1323–1341.
  11. Unet 3+: A full-scale connected unet for medical image segmentation. In: ICASSP 2020-2020 IEEE international conference on acoustics, speech and signal processing (ICASSP) IEEE; 2020. p. 1055–1059.
  12. Swin unetr: Swin transformers for semantic segmentation of brain tumors in mri images. In: International MICCAI Brainlesion Workshop Springer; 2021. p. 272–284.
  13. Transbts: Multimodal brain tumor segmentation using transformer. In: Medical Image Computing and Computer Assisted Intervention–MICCAI 2021: 24th International Conference, Strasbourg, France, September 27–October 1, 2021, Proceedings, Part I 24 Springer; 2021. p. 109–119.
  14. Cotr: Efficiently bridging cnn and transformer for 3d medical image segmentation. In: Medical Image Computing and Computer Assisted Intervention–MICCAI 2021: 24th International Conference, Strasbourg, France, September 27–October 1, 2021, Proceedings, Part III 24 Springer; 2021. p. 171–180.
  15. Mednext: transformer-driven scaling of convnets for medical image segmentation. In: International Conference on Medical Image Computing and Computer-Assisted Intervention Springer; 2023. p. 405–415.
  16. U-net: Convolutional networks for biomedical image segmentation. In: Medical Image Computing and Computer-Assisted Intervention–MICCAI 2015: 18th International Conference, Munich, Germany, October 5-9, 2015, Proceedings, Part III 18 Springer; 2015. p. 234–241.
  17. V-net: Fully convolutional neural networks for volumetric medical image segmentation. In: 2016 fourth international conference on 3D vision (3DV) Ieee; 2016. p. 565–571.
  18. Transunet: Transformers make strong encoders for medical image segmentation. arXiv preprint arXiv:210204306 2021;.
  19. nnformer: Interleaved transformer for volumetric segmentation. arXiv preprint arXiv:210903201 2021;.
  20. Transfuse: Fusing transformers and cnns for medical image segmentation. In: Medical Image Computing and Computer Assisted Intervention–MICCAI 2021: 24th International Conference, Strasbourg, France, September 27–October 1, 2021, Proceedings, Part I 24 Springer; 2021. p. 14–24.
  21. Slim UNETR: Scale Hybrid Transformers to Efficient 3D Medical Image Segmentation Under Limited Computational Resources. IEEE Transactions on Medical Imaging 2023;.
  22. Yin X, Xu X. A Method for Improving Accuracy of DeepLabv3+ Semantic Segmentation Model Based on Wavelet Transform. In: International Conference in Communications, Signal Processing, and Systems Springer; 2021. p. 315–320.
  23. Wavelet based fine-to-coarse retinal blood vessel extraction using U-net model. In: 2020 International Conference on Signal Processing and Communications (SPCOM) IEEE; 2020. p. 1–5.
  24. Multi-scale wavelet network algorithm for pediatric echocardiographic segmentation via hierarchical feature guided fusion. Applied Soft Computing 2021;107:107386.
  25. Lumen & media segmentation of IVUS images via ellipse fitting using a wavelet-decomposed subband CNN. In: 2020 IEEE 30th International Workshop on Machine Learning for Signal Processing (MLSP) IEEE; 2020. p. 1–6.
  26. Sea ice change detection in SAR images based on convolutional-wavelet neural networks. IEEE Geoscience and Remote Sensing Letters 2019;16(8):1240–1244.
  27. Multi-level wavelet convolutional neural networks. IEEE Access 2019;7:74973–74985.
  28. Aerial LaneNet: Lane-marking semantic segmentation in aerial imagery using wavelet-enhanced cost-sensitive symmetric fully convolutional neural networks. IEEE Transactions on Geoscience and Remote Sensing 2018;57(5):2920–2938.
  29. SAR image segmentation based on convolutional-wavelet neural network and Markov random field. Pattern Recognition 2017;64:255–267.
  30. Li Q, Shen L. Wavesnet: Wavelet integrated deep networks for image segmentation. In: Chinese Conference on Pattern Recognition and Computer Vision (PRCV) Springer; 2022. p. 325–337.
  31. Canadian association of radiologists guidance on contrast-associated acute kidney injury. Canadian Journal of Kidney Health and Disease 2022;9:20543581221097455.
  32. Cashion W, Weisbord SD. Radiographic contrast media and the kidney. Clinical Journal of the American Society of Nephrology 2022;17(8):1234–1242.
  33. PINK1-parkin pathway of mitophagy protects against contrast-induced acute kidney injury via decreasing mitochondrial ROS and NLRP3 inflammasome activation. Redox biology 2019;26:101254.
  34. Deep learning reconstruction shows better lung nodule detection for ultra–low-dose chest CT. Radiology 2022;303(1):202–212.
  35. Whole-body computed tomography: a new point of view in a hospital check-up unit? Our experience in 6516 patients. La radiologia medica 2019;124:1199–1211.
  36. Radiomic analysis of contrast-enhanced CT predicts microvascular invasion and outcome in hepatocellular carcinoma. Journal of hepatology 2019;70(6):1133–1144.
  37. Preoperative CT for characterization of aggressive macrotrabecular-massive subtype and vessels that encapsulate tumor clusters pattern in hepatocellular carcinoma. Radiology 2021;300(1):219–229.
List To Do Tasks Checklist Streamline Icon: https://streamlinehq.com

Collections

Sign up for free to add this paper to one or more collections.

Summary

We haven't generated a summary for this paper yet.

Dice Question Streamline Icon: https://streamlinehq.com

Follow-up Questions

We haven't generated follow-up questions for this paper yet.

X Twitter Logo Streamline Icon: https://streamlinehq.com