A Ca$^{2+}$ puff model based on integrodifferential equations (2401.17326v1)

Abstract: The calcium (Ca$^{2+}$) signalling system is important for many cellular processes within the human body. Signals are transmitted within the cell by releasing Ca$^{2+}$ from the endoplasmic reticulum (ER) into the cytosol via clusters of Ca$^{2+}$ channels. Mathematical models of Ca$^{2+}$ release via inositol 1,4,5-trisphosphate receptors (IP${3}$R) help with understanding underlying Ca$^{2+}$ dynamics but data-driven modelling of stochastic Ca$^{2+}$ release events, known as Ca$^{2+}$ puffs, is a difficult challenge. Parameterising Markov models for representing the IP${3}$R with steady-state single channel data obtained at fixed combinations of the ligands Ca$^{2+}$ and inositol-trisphosphate (IP${3}$) has previously been demonstrated to be insufficient. However, by extending an IP${3}$R model based on steady-state data with an integral term that incorporates the delayed response of the channel to varying Ca$^{2+}$ concentrations we succeed in generating realistic Ca$^{2+}$ puffs. By interpreting the integral term as a weighted average of Ca$^{2+}$ concentrations that extend over a time interval of length $\tau$ into the past we conclude that the IP$_{3}$R requires a certain amount of memory of past ligand concentrations.