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Causal-learn: Causal Discovery in Python (2307.16405v1)

Published 31 Jul 2023 in cs.LG, stat.ME, and stat.ML

Abstract: Causal discovery aims at revealing causal relations from observational data, which is a fundamental task in science and engineering. We describe $\textit{causal-learn}$, an open-source Python library for causal discovery. This library focuses on bringing a comprehensive collection of causal discovery methods to both practitioners and researchers. It provides easy-to-use APIs for non-specialists, modular building blocks for developers, detailed documentation for learners, and comprehensive methods for all. Different from previous packages in R or Java, $\textit{causal-learn}$ is fully developed in Python, which could be more in tune with the recent preference shift in programming languages within related communities. The library is available at https://github.com/py-why/causal-learn.

Citations (45)

Summary

  • The paper’s main contribution is presenting a Python-based library that unifies a wide range of causal discovery algorithms to reveal causal relationships from observational data.
  • It employs constraint-based, score-based, and functional causal methods to provide robust and flexible strategies for uncovering complex causal structures.
  • The modular design facilitates seamless integration into custom workflows, accelerating advancements and innovation in empirical causal inference.

Overview of "Causal-learn: Causal Discovery in Python"

The paper "Causal-learn: Causal Discovery in Python" by Zheng et al. presents an introduction and detailed description of causal-learn, an open-source Python library designed specifically for causal discovery tasks. This library addresses the increasing demand for tools to reveal causal relationships from observational data, a task pivotal across multiple scientific fields such as genomics, neuroscience, and epidemiology.

Key Features and Contributions

The primary contribution of causal-learn is the provision of a comprehensive suite of algorithms and methods for causal discovery within a purely Python-based framework. The library stands out by offering:

  • Extensive Algorithm Coverage: Causal-learn includes a broad range of causal discovery algorithms spanning various categories:
    • Constraint-Based Methods: Includes traditional and widely-used algorithms such as PC and FCI, known for their ability to output Markov equivalence classes by leveraging conditional independence tests.
    • Score-Based Methods: Includes Greedy Equivalence Search (GES) and others that utilize score optimization to determine causal structures.
    • Functional Causal Models: Introduces methods based on specific causal assumptions, allowing for the identification of unique causal directions, such as the LiNGAM and ANM models.
    • Causal Representation Learning: Implements the GIN condition for more sophisticated scenarios involving latent variables.
  • Python-Centric Implementation: Unlike other packages reliant on Java or R, causal-learn is fully implemented in Python, enhancing its accessibility and ease of use for Python practitioners and researchers, especially those in the machine learning community.
  • Modular Design: The library provides standalone modules for critical functionalities like independence tests, score functions, and graph operations. This flexibility allows users to integrate specific components into custom workflows easily.

Implications and Future Directions

The development of causal-learn aligns with the shift towards Python in the research community, offering significant utility for both novice and seasoned researchers in causal discovery tasks. Its ability to integrate seamlessly into the Python ecosystem simplifies the application of causal analysis across various domains, facilitating advancements in scientific research where direct experimentation is not feasible.

From a theoretical perspective, causal-learn provides a robust platform for the further development and testing of new causal algorithms. Its modular structure encourages contributions and extensions, making it a potentially pivotal resource for exploring novel causality models and methods.

Looking forward, the continuous expansion and adaptation of causal-learn to incorporate the latest research developments will likely enhance its role as a valuable tool in the AI and machine learning research domains. The active contribution from the open-source community will further accelerate its evolution, maintaining its relevance and efficacy in causal discovery endeavors.

Conclusion

Causal-learn represents a significant contribution to the computational causality landscape by offering a versatile, Python-based library containing cutting-edge causal discovery methods. It effectively lowers barriers to entry in causal analysis, enabling researchers across disciplines to leverage sophisticated causal inference techniques within their empirical investigations.

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