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SwinMM: Masked Multi-view with Swin Transformers for 3D Medical Image Segmentation (2307.12591v1)

Published 24 Jul 2023 in cs.CV

Abstract: Recent advancements in large-scale Vision Transformers have made significant strides in improving pre-trained models for medical image segmentation. However, these methods face a notable challenge in acquiring a substantial amount of pre-training data, particularly within the medical field. To address this limitation, we present Masked Multi-view with Swin Transformers (SwinMM), a novel multi-view pipeline for enabling accurate and data-efficient self-supervised medical image analysis. Our strategy harnesses the potential of multi-view information by incorporating two principal components. In the pre-training phase, we deploy a masked multi-view encoder devised to concurrently train masked multi-view observations through a range of diverse proxy tasks. These tasks span image reconstruction, rotation, contrastive learning, and a novel task that employs a mutual learning paradigm. This new task capitalizes on the consistency between predictions from various perspectives, enabling the extraction of hidden multi-view information from 3D medical data. In the fine-tuning stage, a cross-view decoder is developed to aggregate the multi-view information through a cross-attention block. Compared with the previous state-of-the-art self-supervised learning method Swin UNETR, SwinMM demonstrates a notable advantage on several medical image segmentation tasks. It allows for a smooth integration of multi-view information, significantly boosting both the accuracy and data-efficiency of the model. Code and models are available at https://github.com/UCSC-VLAA/SwinMM/.

Overview of SwinMM: A Multi-View Swin Transformer Approach for 3D Medical Image Segmentation

This paper presents SwinMM, a novel framework designed to enhance 3D medical image segmentation through a masked multi-view approach utilizing Swin Transformers. In addressing the significant challenge of acquiring sufficient pre-training data inherent to the medical domain, SwinMM proposes a self-supervised learning strategy leveraging multi-view information. The dual-stage process consists of a masked multi-view encoder for pre-training and a cross-view decoder for fine-tuning, aiming to improve both the accuracy and data efficiency of segmentation tasks in medical imaging.

Methodological Innovations

The SwinMM approach is built on two key components: a masked multi-view encoder and a cross-view decoder. The encoder processes multiple masked views during pre-training, focusing on diverse proxy tasks such as image reconstruction, rotation, contrastive learning, and a novel mutual learning paradigm that facilitates consistency across different perspectives. This multi-faceted pre-training effectively extracts hidden multi-view information from 3D medical data, enabling enriched high-level feature representations essential for segmentation.

In the fine-tuning phase, the cross-view decoder aggregates information from various views via a cross-attention block. This integration ensures more precise segmentation predictions by employing a multi-view consistency loss that enforces aligned outputs from diverse perspectives. The incorporation of these components affirms SwinMM's capacity to deliver enhanced performance with reduced reliance on extensive labeled datasets.

Empirical Analysis

Empirical results demonstrate SwinMM's superiority over existing baseline methods, such as Swin UNETR and other established architectures, across multiple datasets. On the WORD and ACDC datasets, SwinMM achieves notable improvements in average Dice scores and Hausdorff distances, indicating its robustness and efficiency. The multi-view design contributes significantly to these advances by alleviating prediction uncertainty and integrating complementary information.

A detailed ablation paper further underscores the contributions of each design aspect, including the effectiveness of the proposed proxy tasks during pre-training and the data efficiency achieved through semi-supervised learning settings. Particularly, the model showcases remarkable robustness and precision stability under varying label ratios, outperforming existing methods even with limited labeled data.

Implications and Future Work

SwinMM presents compelling implications for the field of medical image analysis. By significantly improving the accuracy of segmentation with fewer labeled examples, it addresses critical challenges associated with data scarcity in medical imaging. This potential positions SwinMM as a promising tool for practical applications in computer-assisted diagnoses.

Future research could extend SwinMM's applicability across diverse imaging modalities and explore enhancements in multi-view learning. Investigations into alternative cross-attention mechanisms or the inclusion of additional proxy tasks could offer further refinements in flexibility and performance. Additionally, adapting SwinMM to other domains beyond medical imaging, where multi-view information is prevalent, may lead to broader impacts of this innovative approach in AI-driven analysis.

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Authors (10)
  1. Yiqing Wang (11 papers)
  2. Zihan Li (56 papers)
  3. Jieru Mei (26 papers)
  4. Zihao Wei (15 papers)
  5. Li Liu (311 papers)
  6. Chen Wang (600 papers)
  7. Shengtian Sang (5 papers)
  8. Alan Yuille (294 papers)
  9. Cihang Xie (91 papers)
  10. Yuyin Zhou (92 papers)
Citations (20)